NGS Details (SRR3458562_Metagenome_example): Lambdavirus lvO276

Assembly

138 (3 contig(s))
2.2
3
0.19 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Lambdavirus lvO276 (Taxonomy ID: 2844130)
97.8261
97.5
0
67

Alignment

264.0 (NT) + 311.0 (AA) = 575.0
97.9557
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT23724239240.3%26495.7%138 (100%)135 (97.8%)0/0
Mutations:23724T>A, 23728A>C, 23778G>T
CDS
14054.8%31191.5%40 (100%)39 (97.5%)0/0/0/00
Proteins
14054.8%31191.5%40 (100%)39 (97.5%)0/0/0/00
Protein mutations:none
Codon mutations:CAC44A.. (23778G>T), CTT60..G (23728A>C), AAG62T.. (23724T>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43