Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Traversvirus P27

Assembly

126 (1 contig(s))
2.1
3
0.19 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Traversvirus P27 (Taxonomy ID: 2844223)
97.619
92.8571
0
88

Alignment

240.0 (NT) + 261.0 (AA) = 501.0
95.7935
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT14752148770.2%24095.2%126 (100%)123 (97.6%)0/0
Mutations:14858A>C, 14866T>A, 14869A>C
CDS
15920017.9%26193.2%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:T194P (14858A>C), E197D (14869A>C)
Codon mutations:ACG194CCG (14858A>C), CCT196CCA (14866T>A), GAA197GAC (14869A>C)
Proteins
15920017.9%26193.2%42 (100%)39 (92.9%)0/0/0/00
Protein mutations:T194P (14858A>C), E197D (14869A>C)
Codon mutations:ACG194CCG (14858A>C), CCT196CCA (14866T>A), GAA197GAC (14869A>C)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43