Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Likavirus izzy

Assembly

135 (1 contig(s))
1.0
1
0.06 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Likavirus izzy (Taxonomy ID: 1982888)
83.7037
77.7778
0
75

Alignment

182.0 (NT) + 292.0 (AA) = 474.0
77.9605
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT39476396100.3%18267.4%135 (100%)113 (83.7%)0/0
Mutations:39479A>G, 39484C>G, 39492C>T, 39499A>G, 39505A>G, 39508G>C, 39511A>G, 39522T>G, 39526C>G, 39528C>T, 39538G>C, 39543C>T, 39550A>G, 39571G>C, 39573T>G, 39574G>C, 39578C>T, 39579C>T, 39583A>C, 39584G>T, 39585G>T, 39595C>G
CDS
3894333.9%29284.1%45 (100%)35 (77.8%)0/0/0/00
Protein mutations:P397K (39583A>C 39584G>T 39585G>T), G399K (39578C>T 39579C>T), I401L (39571G>C 39573T>G), V411I (39543C>T), V416I (39526C>G 39528C>T), I418L (39522T>G), D422E (39508G>C), V428M (39492C>T), V432A (39479A>G)
Codon mutations:CTG393CTC (39595C>G), CCT397AAG (39583A>C 39584G>T 39585G>T), GGG399AAG (39578C>T 39579C>T), CTC400CTG (39574G>C), ATC401CTG (39571G>C 39573T>G), CCT408CCC (39550A>G), GTC411ATC (39543C>T), TCC412TCG (39538G>C), GTG416ATC (39526C>G 39528C>T), ATC418CTC (39522T>G), GAT421GAC (39511A>G), GAC422GAG (39508G>C), CGT423CGC (39505A>G), CGT425CGC (39499A>G), GTG428ATG (39492C>T), CGG430CGC (39484C>G), GTC432GCC (39479A>G)
Proteins
3894333.9%29284.1%45 (100%)35 (77.8%)0/0/0/00
Protein mutations:P397K (39583A>C 39584G>T 39585G>T), G399K (39578C>T 39579C>T), I401L (39571G>C 39573T>G), V411I (39543C>T), V416I (39526C>G 39528C>T), I418L (39522T>G), D422E (39508G>C), V428M (39492C>T), V432A (39479A>G)
Codon mutations:CTG393CTC (39595C>G), CCT397AAG (39583A>C 39584G>T 39585G>T), GGG399AAG (39578C>T 39579C>T), CTC400CTG (39574G>C), ATC401CTG (39571G>C 39573T>G), CCT408CCC (39550A>G), GTC411ATC (39543C>T), TCC412TCG (39538G>C), GTG416ATC (39526C>G 39528C>T), ATC418CTC (39522T>G), GAT421GAC (39511A>G), GAC422GAG (39508G>C), CGT423CGC (39505A>G), CGT425CGC (39499A>G), GTG428ATG (39492C>T), CGG430CGC (39484C>G), GTC432GCC (39479A>G)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43