Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pankowvirus pv2851

Assembly

5241 (30 contig(s))
6.1
336
21.68 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pankowvirus pv2851 (Taxonomy ID: 2844123)
99.5039
98.6624
8
75

Alignment

10378.0 (NT) + 10711.0 (AA) = 21089.0
99.3592
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT6249528429.2%1037899.0%5241 (100%)5215 (99.5%)0/0
Mutations:13040T>C, 13427T>C, 13430G>T, 13649T>C, 13655G>A, 13715G>C, 13841C>T, 13859G>A, 13976T>C, 14036G>A, 14045A>G, 14063T>C, 17688A>G, 17711G>A, 17798T>A, 17831G>A, 17836C>T, 17845C>T, 18038G>A, 18068C>A, 18243C>T, 18254C>T, 18305C>G, 52344G>A, 52372G>T, 52383A>T
CDS
14317111.1%23095.4%29 (100%)29 (100%)0/0/0/00
112120.1%19297.0%28 (100%)27 (96.4%)0/0/0/00
18475.6%41997.9%68 (100%)66 (97.1%)0/0/0/00
14887.3%34597.7%48 (100%)47 (97.9%)0/0/0/00
6012341.5%32093.6%51 (100%)50 (98.0%)0/0/0/01
618751.4%77095.4%113 (100%)113 (100%)0/0/0/00
172100%493100%72 (100%)72 (100%)0/0/0/01
15619113.1%260100%36 (100%)36 (100%)0/0/0/00
1045974.1%220398.4%340 (100%)338 (99.4%)0/0/0/01
9117634.1%40696.0%60 (100%)60 (100%)0/0/0/01
2522520.4%120.0%1 (100%)1 (100%)0/0/0/01
1297100%208499.5%297 (100%)294 (99.0%)0/0/0/01
Protein mutations:A113T (17845C>T), A116T (17836C>T), V165A (17688A>G)
Codon mutations:CCG38CCT (18068C>A), GAC48GAT (18038G>A), GCC113ACC (17845C>T), GCA116ACA (17836C>T), GGC117GGT (17831G>A), CGA128CGT (17798T>A), GCC157GCT (17711G>A), GTC165GCC (17688A>G)
4110963.3%46194.9%69 (100%)66 (95.7%)0/0/0/01
Protein mutations:S67T (18305C>G), R84H (18254C>T), D88N (18243C>T)
Codon mutations:AGC67ACC (18305C>G), CGC84CAC (18254C>T), GAT88AAT (18243C>T)
2232240.9%520.0%2 (100%)2 (100%)0/0/0/01
23722.1%279100%36 (100%)36 (100%)0/0/0/00
255015.7%19097.4%26 (100%)25 (96.2%)0/0/0/00
175526.7%27096.4%39 (100%)38 (97.4%)0/0/0/00
23833027.8%67099.4%93 (100%)92 (98.9%)0/0/0/00
6096322.0%17397.2%24 (100%)23 (95.8%)0/0/0/00
118757.0%79397.4%114 (100%)111 (97.4%)0/0/0/00
Protein mutations:A115S (52372G>T)
Codon mutations:GTG105GTA (52344G>A), GCG115TCG (52372G>T), GGA118GGT (52383A>T)
27505.5%14794.8%24 (100%)23 (95.8%)0/0/0/00
Proteins
14317111.1%23095.4%29 (100%)29 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
112120.1%19297.0%28 (100%)27 (96.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
18475.6%41997.9%68 (100%)66 (97.1%)0/0/0/00
Protein mutations:none
Codon mutations:none
14887.3%34597.7%48 (100%)47 (97.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
6012341.5%32093.6%51 (100%)50 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:none
618751.4%77095.4%113 (100%)113 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
172100%493100%72 (100%)72 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
15619113.1%260100%36 (100%)36 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
1045974.1%220398.4%340 (100%)338 (99.4%)0/0/0/01
Protein mutations:none
Codon mutations:AGT82AGC (13040T>C), GGT211GGC (13427T>C), GTG212GTT (13430G>T), GCT285GCC (13649T>C), CGG287CGA (13655G>A), CTG307CTC (13715G>C), ATC349ATT (13841C>T), TCG355TCA (13859G>A), GAT394GAC (13976T>C), TCG414TCA (14036G>A), ACA417ACG (14045A>G), TGT423TGC (14063T>C)
9117634.1%40696.0%60 (100%)60 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
2522520.4%120.0%1 (100%)1 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1297100%208499.5%297 (100%)294 (99.0%)0/0/0/01
Protein mutations:A113T (17845C>T), A116T (17836C>T), V165A (17688A>G)
Codon mutations:CCG38CCT (18068C>A), GAC48GAT (18038G>A), GCC113ACC (17845C>T), GCA116ACA (17836C>T), GGC117GGT (17831G>A), CGA128CGT (17798T>A), GCC157GCT (17711G>A), GTC165GCC (17688A>G)
4110963.3%46194.9%69 (100%)66 (95.7%)0/0/0/01
Protein mutations:S67T (18305C>G), R84H (18254C>T), D88N (18243C>T)
Codon mutations:AGC67ACC (18305C>G), CGC84CAC (18254C>T), GAT88AAT (18243C>T)
2232240.9%520.0%2 (100%)2 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
23722.1%279100%36 (100%)36 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
255015.7%19097.4%26 (100%)25 (96.2%)0/0/0/00
Protein mutations:none
Codon mutations:none
175526.7%27096.4%39 (100%)38 (97.4%)0/0/0/00
Protein mutations:none
Codon mutations:none
23833027.8%67099.4%93 (100%)92 (98.9%)0/0/0/00
Protein mutations:none
Codon mutations:none
6096322.0%17397.2%24 (100%)23 (95.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
118757.0%79397.4%114 (100%)111 (97.4%)0/0/0/00
Protein mutations:A115S (52372G>T)
Codon mutations:GTG105GTA (52344G>A), GCG115TCG (52372G>T), GGA118GGT (52383A>T)
27505.5%14794.8%24 (100%)23 (95.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43