Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Alisovirus socal22
Assembly
73 (3 contig(s))
1.0
1
0.06 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
78.0 (NT) + 149.0 (AA) = 227.0
76.9492
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 162351 | 162457 | 0.1% | 78 | 53.4% | 73 (100%) | 56 (76.7%) | 0/0 | |
| Mutations: | 162351T>A, 162357T>C, 162360C>T, 162366T>C, 162369A>T, 162378G>A, 162384T>C, 162393G>A, 162408A>G, 162411C>T, 162429C>T, 162435G>A, 162438T>C, 162445C>A, 162450T>C, 162453A>T, 162457T>A | ||||||||