Version 2.16.1
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Pepino mosaic virus

Assembly

6411 (1 contig(s))
37891.8
2149356
138686.01 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Pepino mosaic virus (Taxonomy ID: 112229)
79.1576
89.2504
5
5

Alignment

7430.0 (NT) + 13204.0 (AA) = 20634.0
75.1968
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT31644199.4%743058.2%6402 (99.7%)5074 (79.0%)8/9
Mutations:104T>C, 110G>A, 122A>G, 137G>A, 140C>T, 158C>T, 161T>C, 171C>A, 179A>G, 182T>C, 185A>G, 191T>C, 200T>C, 209C>T, 221T>C, 246C>T, 248T>A, 258A>G, 260T>A, 284C>T, 287A>T, 293C>G, 299C>T, 305A>T, 308C>G, 315C>A, 317T>A, 323T>A, 338T>C, 347T>C, 350A>G, 353T>C, 356A>G, 362A>T, 365T>C, 371C>T, 381C>A, 383T>A, 389G>A, 393C>A, 395T>A, 402A>C, 416G>A, 428C>T, 434C>T, 440T>C, 443C>T, 446T>A, 452A>C, 455A>G, 458C>T, 476A>G, 479G>A, 488A>T, 491C>T, 494C>T, 497T>C, 503T>G, 504G>A, 506T>C, 509G>C, 512A>G, 518A>T, 524T>C, 527A>C, 539C>T, 542T>C, 551T>A, 563T>C, 567T>C, 569G>C, 584A>C, 587C>T, 597T>C, 611T>C, 614A>T, 615C>T, 623G>T, 629T>C, 632A>C, 637G>A, 641G>A, 648C>T, 653C>T, 656T>A, 662T>A, 674C>T, 689C>T, 704A>T, 707A>T, 710A>T, 713C>T, 719T>A, 728T>C, 731C>T, 734C>T, 737A>G, 746C>A, 747C>T, 752A>C, 774A>G, 779A>C, 782T>G, 785T>C, 788A>C, 791G>A, 797T>A, 798T>C, 800A>C, 801A>C, 802A>G, 812T>A, 815G>C, 834C>T, 836T>A, 839T>A, 848C>T, 872C>T, 878G>A, 881G>A, 884G>T, 885C>T, 905G>A, 911T>C, 920A>C, 923C>T, 926A>T, 929T>C, 932A>C, 943G>A, 947C>T, 950C>T, 962A>G, 965T>C, 971T>A, 977A>C, 983C>A, 986A>T, 995C>T, 1004G>C, 1010A>T, 1013A>C, 1019A>G, 1022T>G, 1025G>A, 1037A>C, 1043C>G, 1046G>A, 1049T>A, 1052A>G, 1058G>T, 1061T>A, 1064C>T, 1067T>A, 1073G>A, 1076A>T, 1100C>T, 1103G>A, 1106C>T, 1107G>A, 1112A>C, 1122A>G, 1130G>C, 1134C>G, 1139G>A, 1140T>A, 1141C>G, 1142A>C, 1145T>A, 1151T>C, 1154T>C, 1163C>T, 1175C>A, 1181C>T, 1193G>T, 1211C>T, 1238C>T, 1247G>A, 1253C>T, 1265G>T, 1266C>T, 1268C>A, 1271A>T, 1289T>C, 1292T>C, 1295C>T, 1298T>C, 1301T>C, 1307G>A, 1317C>T, 1319T>A, 1322A>T, 1326A>G, 1339C>A, 1340T>A, 1343A>T, 1346A>C, 1349A>G, 1355A>C, 1356A>T, 1358C>T, 1361T>A, 1364A>T, 1367T>G, 1376T>C, 1388G>A, 1391G>A, 1392C>T, 1397T>C, 1398C>A, 1400A>T, 1403G>A, 1410A>C, 1415T>C, 1416A>G, 1419A>G, 1422T>A, 1424C>A, 1430A>T, 1436T>C, 1437G>A, 1440C>G, 1442G>A, 1443A>G, 1444G>C, 1445A>G, 1448A>C, 1450C>A, 1451T>G, 1452G>C, 1454A>T, 1455A>G, 1457A>G, 1458A>G, 1459C>A, 1460T>G, 1467G>C, 1469G>C, 1475G>C, 1481A>G, 1482A>T, 1483C>T, 1486G>A, 1487G>A, 1488C>T, 1491C>A, 1492A>C, 1493A>T, 1496G>T, 1500T>C, 1501G>C, 1503G>C, 1504T>A, 1505T>C, 1506A>C, 1507C>G, 1508T>G, 1510A>G, 1511T>C, 1515A>G, 1517T>A, 1523A>C, 1524G>A, 1526A>C, 1529A>C, 1533T>C, 1535A>T, 1538T>C, 1539C>A, 1542T>G, 1543C>A, 1544T>G, 1545G>A, 1546C>T, 1547A>T, 1548C>A, 1549T>A, 1553T>G, 1556A>T, 1557C>G, 1558A>T, 1559G>A, 1563C>G, 1566T>A, 1571A>C, 1572T>G, 1573C>G, 1574T>C, 1575T>A, 1579G>A, 1580C>T, 1581A>G, 1582G>A, 1583T>A, 1584C>A, 1585A>C, 1586T>A, 1587A>T, 1589A>G, 1591C>T, 1592C>T, 1593T>A, 1594G>A, 1607C>T, 1617A>T, 1619T>A, 1620G>T, 1621A>C, 1624A>C, 1625C>T, 1628C>A, 1629A>C, 1633C>T, 1634T>G, 1635G>C, 1636C>A, 1637G>A, 1640C>T, 1641A>G, 1646T>A, 1655A>G, 1659C>T, 1662T>C, 1664G>C, 1668G>A, 1670A>C, 1673G>C, 1674A>G, 1675T>A, 1677A>G, 1678T>C, 1679A>G, 1682T>A, 1685T>A, 1686C>A, 1687A>T, 1689C>T, 1691C>G, 1694A>C, 1695G>C, 1697A>T, 1698T>G, 1699T>C, 1700G>A, 1702C>A, 1703A>T, 1704C>G, 1705A>T, 1706C>T, 1709G>A, 1718C>T, 1721T>C, 1722T>C, 1723A>T, 1727T>A, 1730A>T, 1739A>C, 1740T>A, 1741C>G, 1744T>C, 1745G>T, 1748G>A, 1757G>A, 1760T>C, 1763G>A, 1764A>G, 1766C>T, 1770A>G, 1772T>G, 1776G>A, 1781T>G, 1787C>A, 1788T>C, 1789C>A, 1791C>A, 1793G>A, 1796G>T, 1800A>G, 1801A>C, 1804A>G, 1805_1806insTGCAGC, 1806G>T, 1807T>A, 1808G>C, 1810A>T, 1811G>T, 1815A>C, 1817T>A, 1819C>A, 1821C>A, 1823T>G, 1826T>A, 1828A>T, 1829C>G, 1830_1832delCAT, 1833G>T, 1836G>A, 1837T>A, 1838T>A, 1839T>C, 1840T>C, 1841T>C, 1842G>A, 1844C>G, 1845A>G, 1847A>T, 1851C>G, 1853G>T, 1855G>A, 1857_1862delTCCGGA, 1863G>A, 1871A>C, 1877A>T, 1880A>T, 1886T>C, 1890C>T, 1892T>G, 1895G>T, 1913G>A, 1919C>T, 1923C>T, 1925T>A, 1932A>G, 1934T>C, 1937G>A, 1943C>T, 1946A>C, 1947G>T, 1952T>A, 1958A>C, 1964G>A, 1970C>T, 1973T>C, 1976C>T, 1977A>T, 1978A>C, 1980A>C, 1981C>A, 1982A>G, 1985A>T, 1994G>C, 1997C>T, 2000A>G, 2003C>T, 2004A>T, 2005G>C, 2006C>T, 2007A>C, 2009T>G, 2012T>A, 2013G>T, 2014C>G, 2015A>T, 2018T>A, 2025A>G, 2027T>A, 2030A>T, 2031C>T, 2034C>A, 2036A>G, 2039C>A, 2045A>G, 2046A>C, 2048A>T, 2051A>T, 2054G>C, 2063T>C, 2066T>A, 2069T>A, 2075T>C, 2076C>A, 2078A>G, 2084A>T, 2096C>T, 2102T>C, 2105C>A, 2111C>T, 2114T>C, 2117G>A, 2120C>T, 2127T>C, 2129A>T, 2135T>C, 2136T>A, 2137C>A, 2142T>A, 2143C>G, 2144A>C, 2155G>A, 2156G>A, 2162T>C, 2195T>C, 2201T>A, 2204A>T, 2207A>T, 2213T>A, 2219C>T, 2222T>C, 2225C>A, 2228C>T, 2234A>C, 2240A>C, 2243A>G, 2258T>C, 2259C>T, 2261C>G, 2267T>A, 2268C>T, 2270T>G, 2273C>T, 2276C>T, 2279T>A, 2285C>T, 2291C>T, 2294A>T, 2297G>T, 2300T>A, 2303G>A, 2306A>C, 2318C>T, 2327T>C, 2333G>A, 2340T>C, 2342G>C, 2343T>C, 2344G>A, 2347A>G, 2348G>A, 2349C>T, 2351A>G, 2360A>G, 2363C>T, 2366T>C, 2378A>G, 2396A>T, 2399A>C, 2402C>T, 2406G>A, 2414C>A, 2423C>T, 2429T>C, 2432A>G, 2444T>C, 2456C>A, 2459T>C, 2460T>C, 2462G>A, 2465C>T, 2483A>G, 2492T>A, 2501A>T, 2504C>T, 2507G>T, 2508C>A, 2516T>C, 2519A>G, 2522T>C, 2528G>A, 2531C>T, 2543A>G, 2567C>T, 2570C>T, 2573T>A, 2576T>C, 2579T>C, 2585C>T, 2591T>C, 2594A>T, 2600C>T, 2601C>T, 2612A>T, 2624T>C, 2627C>T, 2633G>A, 2639T>C, 2642G>A, 2645A>T, 2669T>A, 2673C>T, 2675C>G, 2681T>C, 2684C>T, 2690C>T, 2694A>C, 2699T>C, 2700C>T, 2726G>A, 2729G>T, 2732C>T, 2744G>A, 2757C>T, 2758A>T, 2765A>T, 2768G>A, 2771C>T, 2775G>T, 2786C>T, 2792G>T, 2795T>C, 2801G>T, 2802C>T, 2804T>A, 2807T>A, 2813G>C, 2815G>A, 2816A>G, 2819C>A, 2826T>C, 2828G>C, 2834C>T, 2843A>G, 2849C>T, 2855A>T, 2861G>A, 2864G>T, 2873T>C, 2879C>G, 2882C>T, 2883A>C, 2885A>T, 2888T>A, 2891G>T, 2906T>C, 2915A>T, 2918C>T, 2921A>C, 2930T>A, 2942C>T, 2951G>A, 2972A>C, 2975T>C, 2982A>G, 2983C>T, 2984T>C, 2987C>T, 2996G>A, 3002A>T, 3038C>A, 3039G>A, 3053T>A, 3056A>T, 3057T>G, 3059G>T, 3062T>A, 3065C>T, 3068T>C, 3074G>A, 3075T>G, 3080C>T, 3083C>A, 3092G>A, 3095A>G, 3098G>A, 3107A>T, 3110G>T, 3111C>T, 3113T>G, 3128A>T, 3131A>G, 3134G>A, 3135T>A, 3137A>T, 3143T>C, 3146A>G, 3149C>T, 3155A>C, 3156T>C, 3158T>C, 3164T>C, 3179A>G, 3182T>C, 3185A>T, 3191G>C, 3203G>A, 3215C>G, 3221T>C, 3224A>G, 3230T>C, 3233C>T, 3239A>T, 3245A>T, 3255C>T, 3257T>G, 3260T>C, 3263T>A, 3272G>T, 3278C>A, 3282T>C, 3284A>C, 3285C>A, 3294G>T, 3299A>T, 3317T>C, 3320C>T, 3321T>C, 3323G>C, 3326T>C, 3338C>T, 3343T>C, 3344C>G, 3353A>G, 3362C>T, 3365A>T, 3368G>T, 3371T>C, 3374C>T, 3377G>A, 3378C>G, 3379C>A, 3382G>A, 3383A>G, 3386A>C, 3392A>G, 3395A>C, 3410T>G, 3416T>C, 3419A>T, 3422C>T, 3423T>C, 3425A>T, 3434A>C, 3440T>C, 3443C>T, 3444T>C, 3446G>T, 3455T>G, 3458T>A, 3461C>T, 3470T>A, 3473T>C, 3476T>C, 3479C>T, 3483G>T, 3488C>T, 3491A>G, 3494T>C, 3497C>A, 3498C>T, 3500G>A, 3509A>G, 3521C>G, 3524G>A, 3537T>C, 3539A>T, 3542T>A, 3546G>A, 3551G>A, 3557G>A, 3563C>T, 3572T>A, 3575A>T, 3581C>T, 3596G>C, 3608G>T, 3611C>T, 3620A>G, 3624C>T, 3626C>A, 3629A>G, 3632G>A, 3636A>C, 3638A>G, 3647T>C, 3650A>G, 3659T>C, 3662T>A, 3680A>C, 3690A>G, 3695G>C, 3698C>T, 3699C>A, 3707T>C, 3711C>G, 3713A>T, 3716T>C, 3734A>C, 3737T>C, 3740G>A, 3749T>C, 3755A>T, 3764C>T, 3767A>G, 3779T>A, 3806G>A, 3815C>T, 3818C>T, 3821T>C, 3824C>T, 3827T>A, 3830C>T, 3833C>T, 3834A>G, 3845A>C, 3860A>G, 3861T>C, 3866C>T, 3869C>A, 3878T>C, 3884C>A, 3888T>C, 3890G>C, 3893C>A, 3896T>A, 3902G>A, 3903T>C, 3905G>T, 3920A>C, 3923T>A, 3929T>C, 3932C>T, 3938A>T, 3941A>G, 3947A>G, 3950A>T, 3956T>C, 3962T>C, 3970A>T, 3975C>A, 3980T>C, 3981T>A, 3982C>A, 3983T>C, 3986A>T, 3989C>T, 3995G>A, 3998T>G, 4004T>C, 4007A>T, 4010T>C, 4013T>C, 4034C>G, 4035C>A, 4036A>G, 4037A>T, 4043A>G, 4044C>A, 4045C>A, 4046C>A, 4049T>A, 4052T>C, 4054A>G, 4055A>G, 4058A>G, 4059C>T, 4064G>A, 4067C>T, 4068A>C, 4069A>T, 4070G>A, 4073T>A, 4082C>T, 4088G>A, 4091A>G, 4094A>G, 4096T>A, 4097T>C, 4115T>G, 4121T>C, 4130C>T, 4148T>A, 4151T>A, 4154T>G, 4160C>A, 4169C>T, 4172T>A, 4173T>C, 4175G>T, 4187T>C, 4190C>A, 4197T>C, 4205G>A, 4208A>C, 4211C>T, 4218T>C, 4220A>G, 4226T>A, 4229T>A, 4238A>T, 4244C>A, 4256A>G, 4277T>C, 4278G>C, 4280G>A, 4286C>T, 4287A>G, 4289T>C, 4293T>C, 4298A>C, 4301A>C, 4319C>T, 4325T>A, 4331T>G, 4332C>A, 4334G>A, 4338T>C, 4340G>T, 4346G>A, 4347T>C, 4349A>C, 4352C>T, 4358A>C, 4361A>G, 4364A>C, 4368A>C, 4370A>T, 4376T>G, 4379A>G, 4382G>A, 4385C>T, 4388T>A, 4393A>G, 4395G>T, 4400A>C, 4405G>A, 4428C>T, 4447C>T, 4452T>C, 4463A>T, 4464A>G, 4467G>A, 4471C>A, 4473C>A, 4476C>T, 4479G>A, 4481C>A, 4482A>C, 4485A>G, 4486C>A, 4488C>T, 4490G>A, 4491T>C, 4492G>A, 4493T>C, 4502C>T, 4506A>T, 4524A>T, 4527C>A, 4542T>A, 4545A>G, 4566T>A, 4602C>T, 4605T>C, 4615C>G, 4616A>C, 4617A>T, 4620C>T, 4639T>C, 4641A>T, 4647C>T, 4653C>A, 4660C>T, 4661A>T, 4662T>G, 4668T>C, 4674C>T, 4677T>C, 4683T>C, 4687T>C, 4689G>C, 4690C>T, 4703T>C, 4704A>T, 4714T>C, 4716G>A, 4719T>C, 4722C>T, 4740A>G, 4746A>T, 4755G>A, 4758A>G, 4759C>T, 4761T>G, 4765G>A, 4766T>C, 4767C>A, 4770A>C, 4771C>A, 4773T>C, 4779T>A, 4791T>A, 4794T>C, 4795A>C, 4803A>C, 4806G>A, 4809A>C, 4817A>C, 4818G>T, 4819A>C, 4821T>A, 4822T>C, 4824G>A, 4830A>G, 4831C>T, 4833G>A, 4839C>T, 4845T>C, 4848A>T, 4850T>A, 4851C>G, 4857T>C, 4860G>A, 4861A>G, 4862A>T, 4864G>C, 4874T>C, 4875C>A, 4878T>A, 4883T>A, 4888A>G, 4890C>T, 4896T>C, 4898A>C, 4902T>G, 4909A>T, 4914G>A, 4917T>C, 4920C>T, 4926C>T, 4929T>A, 4933G>A, 4941C>T, 4947C>A, 4953T>A, 4954T>G, 4955C>G, 4959C>T, 4965G>T, 4967T>A, 4971C>T, 4974T>A, 4980A>T, 4983G>A, 4992A>T, 4995A>T, 4998T>C, 5005G>A, 5006C>G, 5007A>T, 5011A>G, 5012C>T, 5013A>T, 5025C>T, 5028A>C, 5032T>C, 5034G>T, 5037C>T, 5039C>G, 5040A>T, 5047G>C, 5048C>A, 5049T>A, 5061T>C, 5064G>A, 5067T>C, 5073C>T, 5076T>A, 5079G>C, 5091C>T, 5092C>T, 5093A>C, 5094C>A, 5097A>G, 5103C>A, 5109G>T, 5128A>G, 5143C>T, 5146C>T, 5155A>G, 5158C>T, 5170C>T, 5173T>A, 5176T>C, 5179C>T, 5180T>C, 5182G>A, 5183T>C, 5209T>C, 5212C>T, 5215C>T, 5218C>T, 5224T>A, 5230T>A, 5233A>T, 5236C>T, 5239C>T, 5246C>A, 5248T>A, 5249T>C, 5251G>A, 5254T>C, 5263C>T, 5266A>G, 5278C>A, 5281C>T, 5284A>G, 5290A>T, 5293C>T, 5296T>C, 5302A>G, 5305A>G, 5308G>A, 5311G>A, 5314A>C, 5323T>C, 5326T>A, 5335A>G, 5336T>C, 5338A>T, 5365C>T, 5368G>A, 5369T>C, 5405T>A, 5410T>C, 5415C>A, 5429T>C, 5430C>A, 5437T>C, 5449A>T, 5456A>C, 5458C>A, 5460A>C, 5461T>A, 5462A>G, 5463C>G, 5464A>T, 5468C>T, 5471T>G, 5474T>C, 5479C>T, 5490A>G, 5495T>A, 5498A>C, 5504C>T, 5517G>C, 5518A>C, 5519G>A, 5528A>C, 5534G>T, 5546A>C, 5580A>C, 5585T>G, 5586G>T, 5587A>G, 5592T>C, 5594G>T, 5595T>A, 5596A>T, 5600A>T, 5601G>T, 5602T>A, 5603G>T, 5604T>C, 5606C>A, 5607A>G, 5608C>T, 5609A>T, 5613A>T, 5618C>A, 5619T>C, 5620T>A, 5621C>A, 5622A>T, 5623A>T, 5627A>C, 5627_5628insT, 5631T>C, 5632C>T, 5636C>G, 5637C>A, 5638T>A, 5639G>A, 5642A>C, 5643C>A, 5645A>C, 5647A>T, 5648C>A, 5650T>A, 5652T>C, 5654G>T, 5657G>A, 5658C>A, 5660A>C, 5662T>A, 5666A>G, 5667G>A, 5677C>A, 5680A>T, 5683C>T, 5684A>G, 5685A>C, 5686A>T, 5687G>C, 5689T>A, 5699A>C, 5701A>G, 5702G>A, 5703C>G, 5704T>C, 5707T>A, 5708T>G, 5710T>C, 5725C>T, 5738A>T, 5739G>C, 5740T>C, 5743C>A, 5758A>G, 5759G>A, 5764G>A, 5767T>C, 5770C>G, 5773C>A, 5776C>T, 5779G>C, 5782C>T, 5785C>A, 5788G>T, 5794A>G, 5797A>T, 5809A>G, 5815A>T, 5821A>G, 5827C>T, 5830C>T, 5833T>C, 5839C>T, 5840C>T, 5842T>A, 5845C>A, 5857T>C, 5860T>A, 5863G>T, 5875T>C, 5878A>C, 5887A>T, 5902G>A, 5908T>A, 5914G>T, 5920G>A, 5923G>T, 5926T>A, 5929A>T, 5932T>C, 5935C>A, 5938T>A, 5950A>T, 5951C>T, 5953A>G, 5956A>T, 5957C>A, 5959C>A, 5962A>T, 5965C>A, 5974T>A, 5986A>T, 5995A>C, 5998C>A, 6004G>A, 6010T>C, 6019C>T, 6025C>A, 6029G>A, 6046T>G, 6047C>T, 6049C>A, 6058C>T, 6059A>G, 6061T>G, 6067A>T, 6070A>C, 6073T>C, 6079C>A, 6083C>T, 6085T>G, 6088T>C, 6091C>T, 6094A>G, 6103A>C, 6106A>G, 6115A>T, 6127C>T, 6139C>A, 6142C>T, 6145T>A, 6148C>T, 6151C>T, 6154G>A, 6163T>A, 6169T>C, 6172T>A, 6184A>C, 6196A>G, 6199A>T, 6211C>G, 6214A>T, 6220G>A, 6223C>T, 6230T>C, 6232G>T, 6235T>C, 6236A>C, 6238G>C, 6241A>G, 6244G>A, 6247C>A, 6253A>T, 6259T>C, 6262T>C, 6265T>C, 6271A>C, 6277A>T, 6283C>T, 6292A>T, 6301A>C, 6304A>C, 6307T>C, 6313C>T, 6322G>A, 6325A>T, 6328C>T, 6334C>T, 6380C>T, 6392_6393insC, 6394A>T, 6396T>G, 6400T>C, 6402C>A, 6403T>A, 6404T>A, 6406G>C, 6407A>T, 6409A>C, 6414A>T
CDS
11440100%904390.4%1437 (99.7%)1288 (89.3%)2/3/0/01
Protein mutations:I58V (258A>G 260T>A), D140N (504G>A 506T>C), Q166H (584A>C), R184K (637G>A), E222D (752A>C), I230V (774A>G), H232Q (782T>G), K239R (801A>C 802A>G), R286Q (943G>A), V341I (1107G>A), T346A (1122A>G), Q350E (1134C>G), T414A (1326A>G), A418E (1339C>A 1340T>A), S424C (1356A>T 1358C>T), N425K (1361T>A), Q438N (1398C>A 1400A>T), K442Q (1410A>C), T444A (1416A>G), I445V (1419A>G), S446T (1422T>A 1424C>A), E451K (1437G>A), Q452E (1440C>G 1442G>A), R453A (1443A>G 1444G>C 1445A>G), E454D (1448A>C), P455Q (1450C>A 1451T>G), E456H (1452G>C 1454A>T), I457V (1455A>G 1457A>G), T458E (1458A>G 1459C>A 1460T>G), E461H (1467G>C 1469G>C), E463D (1475G>C), T466F (1482A>T 1483C>T), R467K (1486G>A 1487G>A), P468S (1488C>T), Q469T (1491C>A 1492A>C 1493A>T), C472P (1500T>C 1501G>C), V473H (1503G>C 1504T>A 1505T>C), T474R (1506A>C 1507C>G 1508T>G), N475S (1510A>G 1511T>C), N477E (1515A>G 1517T>A), V480I (1524G>A 1526A>C), K481N (1529A>C), L485I (1539C>A), S486E (1542T>G 1543C>A 1544T>G), A487I (1545G>A 1546C>T 1547A>T), L488N (1548C>A 1549T>A), D489E (1553T>G), E490D (1556A>T), Q491V (1557C>G 1558A>T 1559G>A), Q493E (1563C>G), C494S (1566T>A), S496G (1572T>G 1573C>G 1574T>C), S497T (1575T>A), S498N (1579G>A 1580C>T), S499E (1581A>G 1582G>A 1583T>A), H500T (1584C>A 1585A>C 1586T>A), I501L (1587A>T 1589A>G), P502L (1591C>T 1592C>T), C503N (1593T>A 1594G>A), T511S (1617A>T 1619T>A), D512S (1620G>T 1621A>C), D513A (1624A>C 1625C>T), D514E (1628C>A), N515H (1629A>C), A516V (1633C>T 1634T>G), A517Q (1635G>C 1636C>A 1637G>A), I519V (1641A>G), H520Q (1646T>A), E528N (1668G>A 1670A>C), I530E (1674A>G 1675T>A), I531A (1677A>G 1678T>C 1679A>G), Q534I (1686C>A 1687A>T), A537P (1695G>C 1697A>T), L538A (1698T>G 1699T>C 1700G>A), P539H (1702C>A 1703A>T), H540V (1704C>G 1705A>T 1706C>T), Y546L (1722T>C 1723A>T), M553T (1744T>C 1745G>T), N560D (1764A>G 1766C>T), I562V (1770A>G 1772T>G), E564K (1776G>A), S568Q (1788T>C 1789C>A), K570N (1796G>T), N572A (1800A>G 1801A>C), N573S (1804A>G), N573_V574insCS (1805_1806insTGCAGC), V574Y (1806G>T 1807T>A 1808G>C), Q575L (1810A>T 1811G>T), T577P (1815A>C 1817T>A), T578N (1819C>A), H579K (1821C>A 1823T>G), D580E (1826T>A), Y581L (1828A>T 1829C>G), H582del (1830_1832delCAT), A583S (1833G>T), V584K (1836G>A 1837T>A 1838T>A), F585P (1839T>C 1840T>C 1841T>C), D586K (1842G>A 1844C>G), T587A (1845A>G 1847A>T), Q589D (1851C>G 1853G>T), S590N (1855G>A), S591_G592del (1857_1862delTCCGGA), D593N (1863G>A), K597N (1877A>T), S616G (1932A>G 1934T>C), K620N (1946A>C), V621L (1947G>T), K631S (1977A>T 1978A>C), T632Q (1980A>C 1981C>A 1982A>G), E636D (1994G>C), I641L (2007A>C 2009T>G), A643C (2013G>T 2014C>G 2015A>T), D644E (2018T>A), N647E (2025A>G 2027T>A), N651K (2039C>A), S684N (2136T>A 2137C>A), R690K (2155G>A 2156G>A), C753H (2343T>C 2344G>A), K754R (2347A>G 2348G>A), V774I (2406G>A), N870H (2694A>C), Q891L (2757C>T 2758A>T), A897S (2775G>T), R910K (2815G>A 2816A>G), T966V (2982A>G 2983C>T 2984T>C), A985T (3039G>A), L991V (3057T>G 3059G>T), S997A (3075T>G), L1017I (3135T>A 3137A>T), Y1024H (3156T>C 3158T>C), V1070L (3294G>T), V1086A (3343T>C 3344C>G), P1098E (3378C>G 3379C>A), R1099K (3382G>A 3383A>G), A1133S (3483G>T), V1154I (3546G>A), N1202D (3690A>G), Q1205K (3699C>A), Q1209D (3711C>G 3713A>T), I1250V (3834A>G), Y1295F (3970A>T), L1297I (3975C>A), S1299N (3981T>A 3982C>A 3983T>C), Q1317S (4035C>A 4036A>G 4037A>T), P1320K (4044C>A 4045C>A 4046C>A), K1323R (4054A>G 4055A>G), K1328L (4068A>C 4069A>T 4070G>A), F1337Y (4096T>A 4097T>C), E1398Q (4278G>C 4280G>A), N1401D (4287A>G 4289T>C), K1436R (4393A>G), A1437S (4395G>T)
Codon mutations:AAT6AAC (104T>C), TTG8TTA (110G>A), AGA12AGG (122A>G), CAG17CAA (137G>A), TCC18TCT (140C>T), GCC24GCT (158C>T), TAT25TAC (161T>C), CGA29AGA (171C>A), GTA31GTG (179A>G), CTT32CTC (182T>C), AAA33AAG (185A>G), TCT35TCC (191T>C), AAT38AAC (200T>C), TAC41TAT (209C>T), GAT45GAC (221T>C), CTT54TTA (246C>T 248T>A), ATT58GTA (258A>G 260T>A), CAC66CAT (284C>T), ACA67ACT (287A>T), GCC69GCG (293C>G), GCC71GCT (299C>T), GTA73GTT (305A>T), GTC74GTG (308C>G), CGT77AGA (315C>A 317T>A), CTT79CTA (323T>A), CAT84CAC (338T>C), CCT87CCC (347T>C), AAA88AAG (350A>G), GAT89GAC (353T>C), GAA90GAG (356A>G), GTA92GTT (362A>T), ACT93ACC (365T>C), ATC95ATT (371C>T), CGT99AGA (381C>A 383T>A), AAG101AAA (389G>A), CGT103AGA (393C>A 395T>A), AGA106CGA (402A>C), GTG110GTA (416G>A), GTC114GTT (428C>T), GTC116GTT (434C>T), CAT118CAC (440T>C), AAC119AAT (443C>T), ATT120ATA (446T>A), CCA122CCC (452A>C), AAA123AAG (455A>G), GAC124GAT (458C>T), GAA130GAG (476A>G), GAG131GAA (479G>A), TCA134TCT (488A>T), ACC135ACT (491C>T), AGC136AGT (494C>T), TTT137TTC (497T>C), GTT139GTG (503T>G), GAT140AAC (504G>A 506T>C), ACG141ACC (509G>C), AGA142AGG (512A>G), GCA144GCT (518A>T), ATT146ATC (524T>C), TCA147TCC (527A>C), CAC151CAT (539C>T), TTT152TTC (542T>C), CCT155CCA (551T>A), ACT159ACC (563T>C), TTG161CTC (567T>C 569G>C), CAA166CAC (584A>C), AAC167AAT (587C>T), TTG171CTG (597T>C), GTT175GTC (611T>C), GTA176GTT (614A>T), CTA177TTA (615C>T), GTG179GTT (623G>T), GCT181GCC (629T>C), ATA182ATC (632A>C), AGA184AAA (637G>A), CAG185CAA (641G>A), CTA188TTA (648C>T), TTC189TTT (653C>T), CCT190CCA (656T>A), ATT192ATA (662T>A), AAC196AAT (674C>T), GGC201GGT (689C>T), CCA206CCT (704A>T), GGA207GGT (707A>T), TCA208TCT (710A>T), CAC209CAT (713C>T), GGT211GGA (719T>A), TAT214TAC (728T>C), TTC215TTT (731C>T), CAC216CAT (734C>T), AAA217AAG (737A>G), ACC220ACA (746C>A), CTA221TTA (747C>T), GAA222GAC (752A>C), ATT230GTT (774A>G), GGA231GGC (779A>C), CAT232CAG (782T>G), GAT233GAC (785T>C), CCA234CCC (788A>C), TTG235TTA (791G>A), GGT237GGA (797T>A), TTA238CTC (798T>C 800A>C), AAA239CGA (801A>C 802A>G), ATT242ATA (812T>A), ACG243ACC (815G>C), CTT250TTA (834C>T 836T>A), GGT251GGA (839T>A), CAC254CAT (848C>T), AAC262AAT (872C>T), GAG264GAA (878G>A), ACG265ACA (881G>A), CCG266CCT (884G>T), CTA267TTA (885C>T), AAG273AAA (905G>A), AGT275AGC (911T>C), ACA278ACC (920A>C), TTC279TTT (923C>T), CCA280CCT (926A>T), AAT281AAC (929T>C), ATA282ATC (932A>C), CGA286CAA (943G>A), CAC287CAT (947C>T), GTC288GTT (950C>T), AAA292AAG (962A>G), CCT293CCC (965T>C), CCT295CCA (971T>A), TCA297TCC (977A>C), GCC299GCA (983C>A), ATA300ATT (986A>T), TAC303TAT (995C>T), GTG306GTC (1004G>C), TCA308TCT (1010A>T), GTA309GTC (1013A>C), AAA311AAG (1019A>G), GTT312GTG (1022T>G), ACG313ACA (1025G>A), ATA317ATC (1037A>C), GCC319GCG (1043C>G), AAG320AAA (1046G>A), GTT321GTA (1049T>A), AGA322AGG (1052A>G), CTG324CTT (1058G>T), ATT325ATA (1061T>A), TCC326TCT (1064C>T), ACT327ACA (1067T>A), GAG329GAA (1073G>A), CTA330CTT (1076A>T), CTC338CTT (1100C>T), ACG339ACA (1103G>A), CAC340CAT (1106C>T), GTT341ATT (1107G>A), GTA342GTC (1112A>C), ACA346GCA (1122A>G), GTG348GTC (1130G>C), CAA350GAA (1134C>G), CTG351CTA (1139G>A), TCA352AGC (1140T>A 1141C>G 1142A>C), TCT353TCA (1145T>A), AAT355AAC (1151T>C), GAT356GAC (1154T>C), AAC359AAT (1163C>T), TCC363TCA (1175C>A), TTC365TTT (1181C>T), CTG369CTT (1193G>T), CAC375CAT (1211C>T), TTC384TTT (1238C>T), AAG387AAA (1247G>A), GAC389GAT (1253C>T), CTG393CTT (1265G>T), CTC394TTA (1266C>T 1268C>A), ACA395ACT (1271A>T), GAT401GAC (1289T>C), TTT402TTC (1292T>C), TCC403TCT (1295C>T), TAT404TAC (1298T>C), ACT405ACC (1301T>C), AAG407AAA (1307G>A), CTT411TTA (1317C>T 1319T>A), GTA412GTT (1322A>T), ACT414GCT (1326A>G), GCT418GAA (1339C>A 1340T>A), ATA419ATT (1343A>T), GGA420GGC (1346A>C), CAA421CAG (1349A>G), ATA423ATC (1355A>C), AGC424TGT (1356A>T 1358C>T), AAT425AAA (1361T>A), GCA426GCT (1364A>T), GCT427GCG (1367T>G), TAT430TAC (1376T>C), AGG434AGA (1388G>A), CAG435CAA (1391G>A), CTG436TTG (1392C>T), ACT437ACC (1397T>C), CAA438AAT (1398C>A 1400A>T), TTG439TTA (1403G>A), AAA442CAA (1410A>C), GGT443GGC (1415T>C), ACA444GCA (1416A>G), ATA445GTA (1419A>G), TCC446ACA (1422T>A 1424C>A), GCA448GCT (1430A>T), TTT450TTC (1436T>C), GAA451AAA (1437G>A), CAG452GAA (1440C>G 1442G>A), AGA453GCG (1443A>G 1444G>C 1445A>G), GAA454GAC (1448A>C), CCT455CAG (1450C>A 1451T>G), GAA456CAT (1452G>C 1454A>T), ATA457GTG (1455A>G 1457A>G), ACT458GAG (1458A>G 1459C>A 1460T>G), GAG461CAC (1467G>C 1469G>C), GAG463GAC (1475G>C), GAA465GAG (1481A>G), ACT466TTT (1482A>T 1483C>T), AGG467AAA (1486G>A 1487G>A), CCC468TCC (1488C>T), CAA469ACT (1491C>A 1492A>C 1493A>T), GTG470GTT (1496G>T), TGC472CCC (1500T>C 1501G>C), GTT473CAC (1503G>C 1504T>A 1505T>C), ACT474CGG (1506A>C 1507C>G 1508T>G), AAT475AGC (1510A>G 1511T>C), AAT477GAA (1515A>G 1517T>A), GCA479GCC (1523A>C), GTA480ATC (1524G>A 1526A>C), AAA481AAC (1529A>C), TTA483CTT (1533T>C 1535A>T), GGT484GGC (1538T>C), CTT485ATT (1539C>A), TCT486GAG (1542T>G 1543C>A 1544T>G), GCA487ATT (1545G>A 1546C>T 1547A>T), CTT488AAT (1548C>A 1549T>A), GAT489GAG (1553T>G), GAA490GAT (1556A>T), CAG491GTA (1557C>G 1558A>T 1559G>A), CAA493GAA (1563C>G), TGT494AGT (1566T>A), TCA495TCC (1571A>C), TCT496GGC (1572T>G 1573C>G 1574T>C), TCT497ACT (1575T>A), AGC498AAT (1579G>A 1580C>T), AGT499GAA (1581A>G 1582G>A 1583T>A), CAT500ACA (1584C>A 1585A>C 1586T>A), ATA501TTG (1587A>T 1589A>G), CCC502CTT (1591C>T 1592C>T), TGC503AAC (1593T>A 1594G>A), TCC507TCT (1607C>T), ACT511TCA (1617A>T 1619T>A), GAT512TCT (1620G>T 1621A>C), GAC513GCT (1624A>C 1625C>T), GAC514GAA (1628C>A), AAT515CAT (1629A>C), GCT516GTG (1633C>T 1634T>G), GCG517CAA (1635G>C 1636C>A 1637G>A), GCC518GCT (1640C>T), ATT519GTT (1641A>G), CAT520CAA (1646T>A), GAA523GAG (1655A>G), CTA525TTA (1659C>T), TTG526CTC (1662T>C 1664G>C), GAA528AAC (1668G>A 1670A>C), CCG529CCC (1673G>C), ATA530GAA (1674A>G 1675T>A), ATA531GCG (1677A>G 1678T>C 1679A>G), GCT532GCA (1682T>A), CCT533CCA (1685T>A), CAA534ATA (1686C>A 1687A>T), CTC535TTG (1689C>T 1691C>G), CCA536CCC (1694A>C), GCA537CCT (1695G>C 1697A>T), TTG538GCA (1698T>G 1699T>C 1700G>A), CCA539CAT (1702C>A 1703A>T), CAC540GTT (1704C>G 1705A>T 1706C>T), AAG541AAA (1709G>A), GCC544GCT (1718C>T), AGT545AGC (1721T>C), TAT546CTT (1722T>C 1723A>T), GCT547GCA (1727T>A), TCA548TCT (1730A>T), TCA551TCC (1739A>C), TCC552AGC (1740T>A 1741C>G), ATG553ACT (1744T>C 1745G>T), AAG554AAA (1748G>A), GAG557GAA (1757G>A), ATT558ATC (1760T>C), GAG559GAA (1763G>A), AAC560GAT (1764A>G 1766C>T), ATT562GTG (1770A>G 1772T>G), GAG564AAG (1776G>A), CTT565CTG (1781T>G), ATC567ATA (1787C>A), TCA568CAA (1788T>C 1789C>A), CGG569AGA (1791C>A 1793G>A), AAG570AAT (1796G>T), AAT572GCT (1800A>G 1801A>C), AAT573AGT (1804A>G), AAT573_GTG574insTGCAGC (1805_1806insTGCAGC), GTG574TAC (1806G>T 1807T>A 1808G>C), CAG575CTT (1810A>T 1811G>T), ACT577CCA (1815A>C 1817T>A), ACT578AAT (1819C>A), CAT579AAG (1821C>A 1823T>G), GAT580GAA (1826T>A), TAC581TTG (1828A>T 1829C>G), CAT582del (1830_1832delCAT), GCA583TCA (1833G>T), GTT584AAA (1836G>A 1837T>A 1838T>A), TTT585CCC (1839T>C 1840T>C 1841T>C), GAC586AAG (1842G>A 1844C>G), ACA587GCT (1845A>G 1847A>T), CAG589GAT (1851C>G 1853G>T), AGC590AAC (1855G>A), TCC591_GGA592del (1857_1862delTCCGGA), GAT593AAT (1863G>A), CCA595CCC (1871A>C), AAA597AAT (1877A>T), GCA598GCT (1880A>T), ATT600ATC (1886T>C), CTT602TTG (1890C>T 1892T>G), CTG603CTT (1895G>T), AAG609AAA (1913G>A), GAC611GAT (1919C>T), CTT613TTA (1923C>T 1925T>A), AGT616GGC (1932A>G 1934T>C), CCG617CCA (1937G>A), GGC619GGT (1943C>T), AAA620AAC (1946A>C), GTG621TTG (1947G>T), ATT622ATA (1952T>A), CCA624CCC (1958A>C), CAG626CAA (1964G>A), ATC628ATT (1970C>T), AAT629AAC (1973T>C), AAC630AAT (1976C>T), AAA631TCA (1977A>T 1978A>C), ACA632CAG (1980A>C 1981C>A 1982A>G), CCA633CCT (1985A>T), GAG636GAC (1994G>C), TAC637TAT (1997C>T), CCA638CCG (2000A>G), TCC639TCT (2003C>T), AGC640TCT (2004A>T 2005G>C 2006C>T), ATT641CTG (2007A>C 2009T>G), CCT642CCA (2012T>A), GCA643TGT (2013G>T 2014C>G 2015A>T), GAT644GAA (2018T>A), AAT647GAA (2025A>G 2027T>A), ACA648ACT (2030A>T), CTG649TTG (2031C>T), CGA650AGG (2034C>A 2036A>G), AAC651AAA (2039C>A), AAA653AAG (2045A>G), AGA654CGT (2046A>C 2048A>T), GCA655GCT (2051A>T), GTG656GTC (2054G>C), ATT659ATC (2063T>C), CCT660CCA (2066T>A), ATT661ATA (2069T>A), CAT663CAC (2075T>C), CGA664AGG (2076C>A 2078A>G), GCA666GCT (2084A>T), AGC670AGT (2096C>T), GAT672GAC (2102T>C), ATC673ATA (2105C>A), AAC675AAT (2111C>T), AAT676AAC (2114T>C), AGG677AGA (2117G>A), ACC678ACT (2120C>T), TTA681CTT (2127T>C 2129A>T), TGT683TGC (2135T>C), TCC684AAC (2136T>A 2137C>A), TCA686AGC (2142T>A 2143C>G 2144A>C), AGG690AAA (2155G>A 2156G>A), AGT692AGC (2162T>C), GTT703GTC (2195T>C), TCT705TCA (2201T>A), GGA706GGT (2204A>T), GTA707GTT (2207A>T), ATT709ATA (2213T>A), GGC711GGT (2219C>T), TGT712TGC (2222T>C), GGC713GGA (2225C>A), GGC714GGT (2228C>T), GGA716GGC (2234A>C), TCA718TCC (2240A>C), CAA719CAG (2243A>G), TTT724TTC (2258T>C), CTC725TTG (2259C>T 2261C>G), ACT727ACA (2267T>A), CTT728TTG (2268C>T 2270T>G), GGC729GGT (2273C>T), GAC730GAT (2276C>T), TCT731TCA (2279T>A), GAC733GAT (2285C>T), TGC735TGT (2291C>T), ACA736ACT (2294A>T), GTG737GTT (2297G>T), GTT738GTA (2300T>A), GTG739GTA (2303G>A), CCA740CCC (2306A>C), CTC744CTT (2318C>T), GAT747GAC (2327T>C), GTG749GTA (2333G>A), TTG752CTC (2340T>C 2342G>C), TGT753CAT (2343T>C 2344G>A), AAG754AGA (2347A>G 2348G>A), CTA755TTG (2349C>T 2351A>G), GAA758GAG (2360A>G), CAC759CAT (2363C>T), ATT760ATC (2366T>C), GAA764GAG (2378A>G), CCA770CCT (2396A>T), GGA771GGC (2399A>C), TTC772TTT (2402C>T), GTT774ATT (2406G>A), ATC776ATA (2414C>A), GAC779GAT (2423C>T), ACT781ACC (2429T>C), AAA782AAG (2432A>G), GGT786GGC (2444T>C), GCC790GCA (2456C>A), TAT791TAC (2459T>C), TTG792CTA (2460T>C 2462G>A), TTC793TTT (2465C>T), GAA799GAG (2483A>G), ATT802ATA (2492T>A), GGA805GGT (2501A>T), GAC806GAT (2504C>T), TCG807TCT (2507G>T), CGG808AGG (2508C>A), AGT810AGC (2516T>C), GTA811GTG (2519A>G), TAT812TAC (2522T>C), GAG814GAA (2528G>A), TCC815TCT (2531C>T), GCA819GCG (2543A>G), GCC827GCT (2567C>T), GTC828GTT (2570C>T), GCT829GCA (2573T>A), TAT830TAC (2576T>C), TAT831TAC (2579T>C), AAC833AAT (2585C>T), TGT835TGC (2591T>C), GGA836GGT (2594A>T), TAC838TAT (2600C>T), CTA839TTA (2601C>T), ACA842ACT (2612A>T), GTT846GTC (2624T>C), CGC847CGT (2627C>T), TTG849TTA (2633G>A), AAT851AAC (2639T>C), AAG852AAA (2642G>A), CTA853CTT (2645A>T), GGT861GGA (2669T>A), CTC863TTG (2673C>T 2675C>G), ATT865ATC (2681T>C), ACC866ACT (2684C>T), GCC868GCT (2690C>T), AAT870CAT (2694A>C), GCT871GCC (2699T>C), CTA872TTA (2700C>T), TTG880TTA (2726G>A), GTG881GTT (2729G>T), CCC882CCT (2732C>T), AAG886AAA (2744G>A), CAA891TTA (2757C>T 2758A>T), ATA893ATT (2765A>T), GGG894GGA (2768G>A), CAC895CAT (2771C>T), GCC897TCC (2775G>T), TAC900TAT (2786C>T), GGG902GGT (2792G>T), TGT903TGC (2795T>C), GGG905GGT (2801G>T), CTT906TTA (2802C>T 2804T>A), ACT907ACA (2807T>A), CCG909CCC (2813G>C), AGA910AAG (2815G>A 2816A>G), GTC911GTA (2819C>A), TTG914CTC (2826T>C 2828G>C), GAC916GAT (2834C>T), ACA919ACG (2843A>G), CAC921CAT (2849C>T), TCA923TCT (2855A>T), AGG925AGA (2861G>A), GTG926GTT (2864G>T), ACT929ACC (2873T>C), CTC931CTG (2879C>G), TCC932TCT (2882C>T), AGA933CGT (2883A>C 2885A>T), GCT934GCA (2888T>A), GTG935GTT (2891G>T), TTT940TTC (2906T>C), ACA943ACT (2915A>T), GGC944GGT (2918C>T), CCA945CCC (2921A>C), TCT948TCA (2930T>A), GAC952GAT (2942C>T), GAG955GAA (2951G>A), GCA962GCC (2972A>C), TTT963TTC (2975T>C), ACT966GTC (2982A>G 2983C>T 2984T>C), TAC967TAT (2987C>T), GAG970GAA (2996G>A), ACA972ACT (3002A>T), CCC984CCA (3038C>A), GCT985ACT (3039G>A), GCT989GCA (3053T>A), CCA990CCT (3056A>T), TTG991GTT (3057T>G 3059G>T), ACT992ACA (3062T>A), CAC993CAT (3065C>T), TTT994TTC (3068T>C), GTG996GTA (3074G>A), TCA997GCA (3075T>G), AAC998AAT (3080C>T), GGC999GGA (3083C>A), TTG1002TTA (3092G>A), GAA1003GAG (3095A>G), AAG1004AAA (3098G>A), TCA1007TCT (3107A>T), GCG1008GCT (3110G>T), CTT1009TTG (3111C>T 3113T>G), GCA1014GCT (3128A>T), AGA1015AGG (3131A>G), GAG1016GAA (3134G>A), TTA1017ATT (3135T>A 3137A>T), GAT1019GAC (3143T>C), AAA1020AAG (3146A>G), CAC1021CAT (3149C>T), GGA1023GGC (3155A>C), TAT1024CAC (3156T>C 3158T>C), AAT1026AAC (3164T>C), GAA1031GAG (3179A>G), AAT1032AAC (3182T>C), CCA1033CCT (3185A>T), GTG1035GTC (3191G>C), CAG1039CAA (3203G>A), GCC1043GCG (3215C>G), GAT1045GAC (3221T>C), GAA1046GAG (3224A>G), CTT1048CTC (3230T>C), TTC1049TTT (3233C>T), GCA1051GCT (3239A>T), ATA1053ATT (3245A>T), CTT1057TTG (3255C>T 3257T>G), TCT1058TCC (3260T>C), ATT1059ATA (3263T>A), CCG1062CCT (3272G>T), GCC1064GCA (3278C>A), TTA1066CTC (3282T>C 3284A>C), CGA1067AGA (3285C>A), GTG1070TTG (3294G>T), CTA1071CTT (3299A>T), GAT1077GAC (3317T>C), ATC1078ATT (3320C>T), TTG1079CTC (3321T>C 3323G>C), TTT1080TTC (3326T>C), CAC1084CAT (3338C>T), GTC1086GCG (3343T>C 3344C>G), TTA1089TTG (3353A>G), GAC1092GAT (3362C>T), CCA1093CCT (3365A>T), GTG1094GTT (3368G>T), GAT1095GAC (3371T>C), TTC1096TTT (3374C>T), GAG1097GAA (3377G>A), CCA1098GAA (3378C>G 3379C>A), AGA1099AAG (3382G>A 3383A>G), ACA1100ACC (3386A>C), GAA1102GAG (3392A>G), ATA1103ATC (3395A>C), GTT1108GTG (3410T>G), AAT1110AAC (3416T>C), ACA1111ACT (3419A>T), TAC1112TAT (3422C>T), TTA1113CTT (3423T>C 3425A>T), CCA1116CCC (3434A>C), GCT1118GCC (3440T>C), AAC1119AAT (3443C>T), TTG1120CTT (3444T>C 3446G>T), GCT1123GCG (3455T>G), GCT1124GCA (3458T>A), AGC1125AGT (3461C>T), TCT1128TCA (3470T>A), CCT1129CCC (3473T>C), GAT1130GAC (3476T>C), TTC1131TTT (3479C>T), GCT1133TCT (3483G>T), AAC1134AAT (3488C>T), AAA1135AAG (3491A>G), ATT1136ATC (3494T>C), TCC1137TCA (3497C>A), CTG1138TTA (3498C>T 3500G>A), AAA1141AAG (3509A>G), GTC1145GTG (3521C>G), AAG1146AAA (3524G>A), TTA1151CTT (3537T>C 3539A>T), GGT1152GGA (3542T>A), GTC1154ATC (3546G>A), AAG1155AAA (3551G>A), AAG1157AAA (3557G>A), GGC1159GGT (3563C>T), ATT1162ATA (3572T>A), GCA1163GCT (3575A>T), TTC1165TTT (3581C>T), GTG1170GTC (3596G>C), GGG1174GGT (3608G>T), ACC1175ACT (3611C>T), AGA1178AGG (3620A>G), CTC1180TTA (3624C>T 3626C>A), AGA1181AGG (3629A>G), AAG1182AAA (3632G>A), AGA1184CGG (3636A>C 3638A>G), TTT1187TTC (3647T>C), CAA1188CAG (3650A>G), CAT1191CAC (3659T>C), ATT1192ATA (3662T>A), ACA1198ACC (3680A>C), AAT1202GAT (3690A>G), CTG1203CTC (3695G>C), AAC1204AAT (3698C>T), CAA1205AAA (3699C>A), GTT1207GTC (3707T>C), CAA1209GAT (3711C>G 3713A>T), GGT1210GGC (3716T>C), ACA1216ACC (3734A>C), GCT1217GCC (3737T>C), CAG1218CAA (3740G>A), GAT1221GAC (3749T>C), ACA1223ACT (3755A>T), GAC1226GAT (3764C>T), CAA1227CAG (3767A>G), GGT1231GGA (3779T>A), AAG1240AAA (3806G>A), TTC1243TTT (3815C>T), TTC1244TTT (3818C>T), AAT1245AAC (3821T>C), ATC1246ATT (3824C>T), CCT1247CCA (3827T>A), GCC1248GCT (3830C>T), GAC1249GAT (3833C>T), ATC1250GTC (3834A>G), GGA1253GGC (3845A>C), AAA1258AAG (3860A>G), TTG1259CTG (3861T>C), AAC1260AAT (3866C>T), GCC1261GCA (3869C>A), TTT1264TTC (3878T>C), GGC1266GGA (3884C>A), TTG1268CTC (3888T>C 3890G>C), TCC1269TCA (3893C>A), ATT1270ATA (3896T>A), AGG1272AGA (3902G>A), TTG1273CTT (3903T>C 3905G>T), CCA1278CCC (3920A>C), ACT1279ACA (3923T>A), GAT1281GAC (3929T>C), GCC1282GCT (3932C>T), ACA1284ACT (3938A>T), GAA1285GAG (3941A>G), TCA1287TCG (3947A>G), ATA1288ATT (3950A>T), TAT1290TAC (3956T>C), GCT1292GCC (3962T>C), TAC1295TTC (3970A>T), CTT1297ATT (3975C>A), GAT1298GAC (3980T>C), TCT1299AAC (3981T>A 3982C>A 3983T>C), ACA1300ACT (3986A>T), GTC1301GTT (3989C>T), CAG1303CAA (3995G>A), GTT1304GTG (3998T>G), GCT1306GCC (4004T>C), GGA1307GGT (4007A>T), GAT1308GAC (4010T>C), GAT1309GAC (4013T>C), GTC1316GTG (4034C>G), CAA1317AGT (4035C>A 4036A>G 4037A>T), AAA1319AAG (4043A>G), CCC1320AAA (4044C>A 4045C>A 4046C>A), TCT1321TCA (4049T>A), TTT1322TTC (4052T>C), AAA1323AGG (4054A>G 4055A>G), AAA1324AAG (4058A>G), CTA1325TTA (4059C>T), CAG1326CAA (4064G>A), AAC1327AAT (4067C>T), AAG1328CTA (4068A>C 4069A>T 4070G>A), CTT1329CTA (4073T>A), ACC1332ACT (4082C>T), AAG1334AAA (4088G>A), ACA1335ACG (4091A>G), CTA1336CTG (4094A>G), TTT1337TAC (4096T>A 4097T>C), GGT1343GGG (4115T>G), TAT1345TAC (4121T>C), TTC1348TTT (4130C>T), ACT1354ACA (4148T>A), CCT1355CCA (4151T>A), GGT1356GGG (4154T>G), ATC1358ATA (4160C>A), AAC1361AAT (4169C>T), CCT1362CCA (4172T>A), TTG1363CTT (4173T>C 4175G>T), GCT1367GCC (4187T>C), TCC1368TCA (4190C>A), TTG1371CTG (4197T>C), GAG1373GAA (4205G>A), GCA1374GCC (4208A>C), ATC1375ATT (4211C>T), TTA1378CTG (4218T>C 4220A>G), ACT1380ACA (4226T>A), GCT1381GCA (4229T>A), TCA1384TCT (4238A>T), GCC1386GCA (4244C>A), AAA1390AAG (4256A>G), GAT1397GAC (4277T>C), GAG1398CAA (4278G>C 4280G>A), CAC1400CAT (4286C>T), AAT1401GAC (4287A>G 4289T>C), TTA1403CTA (4293T>C), ACA1404ACC (4298A>C), CCA1405CCC (4301A>C), CAC1411CAT (4319C>T), CTT1413CTA (4325T>A), GTT1415GTG (4331T>G), CGG1416AGA (4332C>A 4334G>A), TTG1418CTT (4338T>C 4340G>T), AAG1420AAA (4346G>A), TTA1421CTC (4347T>C 4349A>C), CAC1422CAT (4352C>T), GGA1424GGC (4358A>C), GAA1425GAG (4361A>G), GCA1426GCC (4364A>C), AGA1428CGT (4368A>C 4370A>T), GGT1430GGG (4376T>G), GAA1431GAG (4379A>G), AAG1432AAA (4382G>A), AGC1433AGT (4385C>T), CCT1434CCA (4388T>A), AAA1436AGA (4393A>G), GCA1437TCA (4395G>T), ACA1438ACC (4400A>C), TGA1440TAA (4405G>A)
1235100%139786.6%235 (100%)203 (86.4%)0/0/0/01
Protein mutations:Q11L (4463A>T 4464A>G), H14K (4471C>A 4473C>A), P17H (4481C>A 4482A>C), L19I (4486C>A 4488C>T), S20N (4490G>A 4491T>C), V21T (4492G>A 4493T>C), T24I (4502C>T), Q62A (4615C>G 4616A>C 4617A>T), H77L (4660C>T 4661A>T 4662T>G), L91P (4703T>C 4704A>T), V112T (4765G>A 4766T>C 4767C>A), H114N (4771C>A 4773T>C), E129A (4817A>C 4818G>T), I130L (4819A>C 4821T>A), V140E (4850T>A 4851C>G), K144V (4861A>G 4862A>T), E145Q (4864G>C), I148T (4874T>C 4875C>A), F151Y (4883T>A), N153D (4888A>G 4890C>T), E156A (4898A>C), T160S (4909A>T), E168K (4933G>A), D172E (4947C>A), S175G (4954T>G 4955C>G), V179E (4967T>A), A192S (5005G>A 5006C>G 5007A>T), T194V (5011A>G 5012C>T 5013A>T), A203G (5039C>G 5040A>T), A206Q (5047G>C 5048C>A 5049T>A), H221S (5092C>T 5093A>C 5094C>A), N233D (5128A>G)
Codon mutations:CTG6TTG (4447C>T), ATT7ATC (4452T>C), CAA11CTG (4463A>T 4464A>G), TTG12TTA (4467G>A), CAC14AAA (4471C>A 4473C>A), TTC15TTT (4476C>T), GAG16GAA (4479G>A), CCA17CAC (4481C>A 4482A>C), AAA18AAG (4485A>G), CTC19ATT (4486C>A 4488C>T), AGT20AAC (4490G>A 4491T>C), GTT21ACT (4492G>A 4493T>C), ACC24ATC (4502C>T), ATA25ATT (4506A>T), GCA31GCT (4524A>T), GGC32GGA (4527C>A), ACT37ACA (4542T>A), TTA38TTG (4545A>G), GCT45GCA (4566T>A), TGC57TGT (4602C>T), TAT58TAC (4605T>C), CAA62GCT (4615C>G 4616A>C 4617A>T), AAC63AAT (4620C>T), TTA70CTT (4639T>C 4641A>T), TGC72TGT (4647C>T), CCC74CCA (4653C>A), CAT77TTG (4660C>T 4661A>T 4662T>G), GAT79GAC (4668T>C), GTC81GTT (4674C>T), GAT82GAC (4677T>C), TAT84TAC (4683T>C), TTG86CTC (4687T>C 4689G>C), CTA87TTA (4690C>T), CTA91CCT (4703T>C 4704A>T), TTG95CTA (4714T>C 4716G>A), GCT96GCC (4719T>C), ATC97ATT (4722C>T), CAA103CAG (4740A>G), ACA105ACT (4746A>T), GAG108GAA (4755G>A), AGA109AGG (4758A>G), CTT110TTG (4759C>T 4761T>G), GTC112ACA (4765G>A 4766T>C 4767C>A), CCA113CCC (4770A>C), CAT114AAC (4771C>A 4773T>C), ACT116ACA (4779T>A), ACT120ACA (4791T>A), CAT121CAC (4794T>C), AGA122CGA (4795A>C), GGA124GGC (4803A>C), AAG125AAA (4806G>A), TCA126TCC (4809A>C), GAG129GCT (4817A>C 4818G>T), ATT130CTA (4819A>C 4821T>A), TTG131CTA (4822T>C 4824G>A), AAA133AAG (4830A>G), CTG134TTA (4831C>T 4833G>A), GAC136GAT (4839C>T), AAT138AAC (4845T>C), ATA139ATT (4848A>T), GTC140GAG (4850T>A 4851C>G), GTT142GTC (4857T>C), AAG143AAA (4860G>A), AAA144GTA (4861A>G 4862A>T), GAA145CAA (4864G>C), ATC148ACA (4874T>C 4875C>A), GTT149GTA (4878T>A), TTC151TAC (4883T>A), AAC153GAT (4888A>G 4890C>T), TTT155TTC (4896T>C), GAA156GCA (4898A>C), GTT157GTG (4902T>G), ACT160TCT (4909A>T), GAG161GAA (4914G>A), CAT162CAC (4917T>C), ATC163ATT (4920C>T), GCC165GCT (4926C>T), TCT166TCA (4929T>A), GAA168AAA (4933G>A), GTC170GTT (4941C>T), GAC172GAA (4947C>A), GTT174GTA (4953T>A), TCT175GGT (4954T>G 4955C>G), GAC176GAT (4959C>T), GTG178GTT (4965G>T), GTG179GAG (4967T>A), ACC180ACT (4971C>T), ACT181ACA (4974T>A), TCA183TCT (4980A>T), GAG184GAA (4983G>A), GCA187GCT (4992A>T), GGA188GGT (4995A>T), CTT189CTC (4998T>C), GCA192AGT (5005G>A 5006C>G 5007A>T), ACA194GTT (5011A>G 5012C>T 5013A>T), TGC198TGT (5025C>T), ACA199ACC (5028A>C), TTG201CTT (5032T>C 5034G>T), GCC202GCT (5037C>T), GCA203GGT (5039C>G 5040A>T), GCT206CAA (5047G>C 5048C>A 5049T>A), GCT210GCC (5061T>C), AAG211AAA (5064G>A), ACT212ACC (5067T>C), ATC214ATT (5073C>T), TCT215TCA (5076T>A), CTG216CTC (5079G>C), ACC220ACT (5091C>T), CAC221TCA (5092C>T 5093A>C 5094C>A), AAA222AAG (5097A>G), ACC224ACA (5103C>A), GGG226GGT (5109G>T), AAC233GAC (5128A>G)
1124100%83493.1%124 (100%)115 (92.7%)0/0/0/01
Protein mutations:F97I (5405T>A), T100N (5415C>A), S105H (5429T>C 5430C>A), N114Q (5456A>C 5458C>A), N115T (5460A>C 5461T>A), T116G (5462A>G 5463C>G 5464A>T), P118S (5468C>T), L119V (5471T>G), S120P (5474T>C)
Codon mutations:CTA4CTG (5128A>G), GAC9GAT (5143C>T), CTC10CTT (5146C>T), ACA13ACG (5155A>G), TAC14TAT (5158C>T), GCC18GCT (5170C>T), ATT19ATA (5173T>A), GCT20GCC (5176T>C), TTC21TTT (5179C>T), TTG22CTA (5180T>C 5182G>A), TTG23CTG (5183T>C), AAT31AAC (5209T>C), AGC32AGT (5212C>T), CAC33CAT (5215C>T), TAC34TAT (5218C>T), CCT36CCA (5224T>A), GCT38GCA (5230T>A), GGA39GGT (5233A>T), GAC40GAT (5236C>T), AAC41AAT (5239C>T), CGT44AGA (5246C>A 5248T>A), TTG45CTA (5249T>C 5251G>A), CCT46CCC (5254T>C), GGC49GGT (5263C>T), CAA50CAG (5266A>G), GGC54GGA (5278C>A), ACC55ACT (5281C>T), AAA56AAG (5284A>G), ATA58ATT (5290A>T), TCC59TCT (5293C>T), TAT60TAC (5296T>C), CCA62CCG (5302A>G), CAA63CAG (5305A>G), CAG64CAA (5308G>A), CAG65CAA (5311G>A), TCA66TCC (5314A>C), CAT69CAC (5323T>C), TCT70TCA (5326T>A), AAA73AAG (5335A>G), TTA74CTT (5336T>C 5338A>T), CTC83CTT (5365C>T), ACG84ACA (5368G>A), TTG85CTG (5369T>C), TTT97ATT (5405T>A), AGT98AGC (5410T>C), ACT100AAT (5415C>A), TCT105CAT (5429T>C 5430C>A), TAT107TAC (5437T>C), TCA111TCT (5449A>T), AAC114CAA (5456A>C 5458C>A), AAT115ACA (5460A>C 5461T>A), ACA116GGT (5462A>G 5463C>G 5464A>T), CCA118TCA (5468C>T), TTG119GTG (5471T>G), TCA120CCA (5474T>C), GGC121GGT (5479C>T)
185100%45277.8%85 (100%)67 (78.8%)0/0/0/01
Protein mutations:S9L (5365C>T), R10H (5368G>A 5369T>C), V24A (5410T>C), L26I (5415C>A), L31I (5430C>A), I33T (5437T>C), Q37L (5449A>T), T40K (5458C>A), I41Q (5460A>C 5461T>A 5462A>G), H42V (5463C>G 5464A>T), H44Q (5471T>G), A47V (5479C>T), S51G (5490A>G), E60P (5517G>C 5518A>C 5519G>A), K81Q (5580A>C), F82L (5585T>G), E83* (5586G>T 5587A>G), *85H (5592T>C 5594G>T)
Codon mutations:TCA9TTA (5365C>T), CGT10CAC (5368G>A 5369T>C), GCT22GCA (5405T>A), GTC24GCC (5410T>C), CTA26ATA (5415C>A), ATT30ATC (5429T>C), CTT31ATT (5430C>A), ATA33ACA (5437T>C), CAG37CTG (5449A>T), CCA39CCC (5456A>C), ACA40AAA (5458C>A), ATA41CAG (5460A>C 5461T>A 5462A>G), CAC42GTC (5463C>G 5464A>T), AAC43AAT (5468C>T), CAT44CAG (5471T>G), TGT45TGC (5474T>C), GCC47GTC (5479C>T), AGT51GGT (5490A>G), GCT52GCA (5495T>A), GCA53GCC (5498A>C), GTC55GTT (5504C>T), GAG60CCA (5517G>C 5518A>C 5519G>A), CCA63CCC (5528A>C), GTG65GTT (5534G>T), ATA69ATC (5546A>C), AAA81CAA (5580A>C), TTT82TTG (5585T>G), GAA83TGA (5586G>T 5587A>G), TAG85CAT (5592T>C 5594G>T)
1238100%147894.4%238 (100%)220 (92.4%)0/0/0/01
Protein mutations:P2E (5636C>G 5637C>A 5638T>A), D3N (5639G>A), T4Q (5642A>C 5643C>A), T5P (5645A>C 5647A>T), P6T (5648C>A 5650T>A), V7A (5652T>C), A8S (5654G>T), A9N (5657G>A 5658C>A), T10P (5660A>C 5662T>A), S12D (5666A>G 5667G>A), K18A (5684A>G 5685A>C 5686A>T), D19Q (5687G>C 5689T>A), K23Q (5699A>C 5701A>G), A24S (5702G>A 5703C>G 5704T>C), S26A (5708T>G 5710T>C), V43I (5759G>A), V133I (6029G>A), I143V (6059A>G 6061T>G)
Codon mutations:CCT2GAA (5636C>G 5637C>A 5638T>A), GAC3AAC (5639G>A), ACA4CAA (5642A>C 5643C>A), ACA5CCT (5645A>C 5647A>T), CCT6ACA (5648C>A 5650T>A), GTT7GCT (5652T>C), GCT8TCT (5654G>T), GCC9AAC (5657G>A 5658C>A), ACT10CCA (5660A>C 5662T>A), AGT12GAT (5666A>G 5667G>A), CCC15CCA (5677C>A), ACA16ACT (5680A>T), GCC17GCT (5683C>T), AAA18GCT (5684A>G 5685A>C 5686A>T), GAT19CAA (5687G>C 5689T>A), AAA23CAG (5699A>C 5701A>G), GCT24AGC (5702G>A 5703C>G 5704T>C), CCT25CCA (5707T>A), TCT26GCC (5708T>G 5710T>C), CCC31CCT (5725C>T), AGT36TCC (5738A>T 5739G>C 5740T>C), CTC37CTA (5743C>A), AAA42AAG (5758A>G), GTC43ATC (5759G>A), AAG44AAA (5764G>A), TAT45TAC (5767T>C), GTC46GTG (5770C>G), TCC47TCA (5773C>A), ACC48ACT (5776C>T), GTG49GTC (5779G>C), ACC50ACT (5782C>T), TCC51TCA (5785C>A), GTG52GTT (5788G>T), ACA54ACG (5794A>G), CCA55CCT (5797A>T), GAA59GAG (5809A>G), CTA61CTT (5815A>T), AAA63AAG (5821A>G), TTC65TTT (5827C>T), ACC66ACT (5830C>T), GCT67GCC (5833T>C), GGC69GGT (5839C>T), CTT70TTA (5840C>T 5842T>A), GCC71GCA (5845C>A), ACT75ACC (5857T>C), GGT76GGA (5860T>A), CCG77CCT (5863G>T), GAT81GAC (5875T>C), CTA82CTC (5878A>C), GCA85GCT (5887A>T), CAG90CAA (5902G>A), TCT92TCA (5908T>A), TCG94TCT (5914G>T), CAG96CAA (5920G>A), CTG97CTT (5923G>T), ATT98ATA (5926T>A), GGA99GGT (5929A>T), GCT100GCC (5932T>C), ACC101ACA (5935C>A), CCT102CCA (5938T>A), GCA106GCT (5950A>T), CTA107TTG (5951C>T 5953A>G), TCA108TCT (5956A>T), CGC109AGA (5957C>A 5959C>A), CGA110CGT (5962A>T), GCC111GCA (5965C>A), GCT114GCA (5974T>A), CGA118CGT (5986A>T), ATA121ATC (5995A>C), ACC122ACA (5998C>A), AGG124AGA (6004G>A), TTT126TTC (6010T>C), TAC129TAT (6019C>T), GCC131GCA (6025C>A), GTT133ATT (6029G>A), CTT138CTG (6046T>G), CTC139TTA (6047C>T 6049C>A), AAC142AAT (6058C>T), ATT143GTG (6059A>G 6061T>G), CCA145CCT (6067A>T), GCA146GCC (6070A>C), AAT147AAC (6073T>C), GCC149GCA (6079C>A), CTT151TTG (6083C>T 6085T>G), GGT152GGC (6088T>C), TAC153TAT (6091C>T), CAA154CAG (6094A>G), ACA157ACC (6103A>C), AAA158AAG (6106A>G), GCA161GCT (6115A>T), TTC165TTT (6127C>T), ACC169ACA (6139C>A), AAC170AAT (6142C>T), CCT171CCA (6145T>A), GCC172GCT (6148C>T), AGC173AGT (6151C>T), CTG174CTA (6154G>A), GCT177GCA (6163T>A), GGT179GGC (6169T>C), CTT180CTA (6172T>A), CCA184CCC (6184A>C), GAA188GAG (6196A>G), CTA189CTT (6199A>T), TCC193TCG (6211C>G), GTA194GTT (6214A>T), AAG196AAA (6220G>A), TAC197TAT (6223C>T), TTG200CTT (6230T>C 6232G>T), GCT201GCC (6235T>C), AGG202CGC (6236A>C 6238G>C), CAA203CAG (6241A>G), AAG204AAA (6244G>A), ATC205ATA (6247C>A), ACA207ACT (6253A>T), AAT209AAC (6259T>C), TAT210TAC (6262T>C), ATT211ATC (6265T>C), ACA213ACC (6271A>C), GGA215GGT (6277A>T), GTC217GTT (6283C>T), GGA220GGT (6292A>T), GGA223GGC (6301A>C), GGA224GGC (6304A>C), GCT225GCC (6307T>C), ACC227ACT (6313C>T), GCG230GCA (6322G>A), ATA231ATT (6325A>T), GAC232GAT (6328C>T), CCC234CCT (6334C>T)
Proteins
11440100%904390.4%1437 (99.7%)1288 (89.3%)2/3/0/01
Protein mutations:I58V (258A>G 260T>A), D140N (504G>A 506T>C), Q166H (584A>C), R184K (637G>A), E222D (752A>C), I230V (774A>G), H232Q (782T>G), K239R (801A>C 802A>G), R286Q (943G>A), V341I (1107G>A), T346A (1122A>G), Q350E (1134C>G), T414A (1326A>G), A418E (1339C>A 1340T>A), S424C (1356A>T 1358C>T), N425K (1361T>A), Q438N (1398C>A 1400A>T), K442Q (1410A>C), T444A (1416A>G), I445V (1419A>G), S446T (1422T>A 1424C>A), E451K (1437G>A), Q452E (1440C>G 1442G>A), R453A (1443A>G 1444G>C 1445A>G), E454D (1448A>C), P455Q (1450C>A 1451T>G), E456H (1452G>C 1454A>T), I457V (1455A>G 1457A>G), T458E (1458A>G 1459C>A 1460T>G), E461H (1467G>C 1469G>C), E463D (1475G>C), T466F (1482A>T 1483C>T), R467K (1486G>A 1487G>A), P468S (1488C>T), Q469T (1491C>A 1492A>C 1493A>T), C472P (1500T>C 1501G>C), V473H (1503G>C 1504T>A 1505T>C), T474R (1506A>C 1507C>G 1508T>G), N475S (1510A>G 1511T>C), N477E (1515A>G 1517T>A), V480I (1524G>A 1526A>C), K481N (1529A>C), L485I (1539C>A), S486E (1542T>G 1543C>A 1544T>G), A487I (1545G>A 1546C>T 1547A>T), L488N (1548C>A 1549T>A), D489E (1553T>G), E490D (1556A>T), Q491V (1557C>G 1558A>T 1559G>A), Q493E (1563C>G), C494S (1566T>A), S496G (1572T>G 1573C>G 1574T>C), S497T (1575T>A), S498N (1579G>A 1580C>T), S499E (1581A>G 1582G>A 1583T>A), H500T (1584C>A 1585A>C 1586T>A), I501L (1587A>T 1589A>G), P502L (1591C>T 1592C>T), C503N (1593T>A 1594G>A), T511S (1617A>T 1619T>A), D512S (1620G>T 1621A>C), D513A (1624A>C 1625C>T), D514E (1628C>A), N515H (1629A>C), A516V (1633C>T 1634T>G), A517Q (1635G>C 1636C>A 1637G>A), I519V (1641A>G), H520Q (1646T>A), E528N (1668G>A 1670A>C), I530E (1674A>G 1675T>A), I531A (1677A>G 1678T>C 1679A>G), Q534I (1686C>A 1687A>T), A537P (1695G>C 1697A>T), L538A (1698T>G 1699T>C 1700G>A), P539H (1702C>A 1703A>T), H540V (1704C>G 1705A>T 1706C>T), Y546L (1722T>C 1723A>T), M553T (1744T>C 1745G>T), N560D (1764A>G 1766C>T), I562V (1770A>G 1772T>G), E564K (1776G>A), S568Q (1788T>C 1789C>A), K570N (1796G>T), N572A (1800A>G 1801A>C), N573S (1804A>G), N573_V574insCS (1805_1806insTGCAGC), V574Y (1806G>T 1807T>A 1808G>C), Q575L (1810A>T 1811G>T), T577P (1815A>C 1817T>A), T578N (1819C>A), H579K (1821C>A 1823T>G), D580E (1826T>A), Y581L (1828A>T 1829C>G), H582del (1830_1832delCAT), A583S (1833G>T), V584K (1836G>A 1837T>A 1838T>A), F585P (1839T>C 1840T>C 1841T>C), D586K (1842G>A 1844C>G), T587A (1845A>G 1847A>T), Q589D (1851C>G 1853G>T), S590N (1855G>A), S591_G592del (1857_1862delTCCGGA), D593N (1863G>A), K597N (1877A>T), S616G (1932A>G 1934T>C), K620N (1946A>C), V621L (1947G>T), K631S (1977A>T 1978A>C), T632Q (1980A>C 1981C>A 1982A>G), E636D (1994G>C), I641L (2007A>C 2009T>G), A643C (2013G>T 2014C>G 2015A>T), D644E (2018T>A), N647E (2025A>G 2027T>A), N651K (2039C>A), S684N (2136T>A 2137C>A), R690K (2155G>A 2156G>A), C753H (2343T>C 2344G>A), K754R (2347A>G 2348G>A), V774I (2406G>A), N870H (2694A>C), Q891L (2757C>T 2758A>T), A897S (2775G>T), R910K (2815G>A 2816A>G), T966V (2982A>G 2983C>T 2984T>C), A985T (3039G>A), L991V (3057T>G 3059G>T), S997A (3075T>G), L1017I (3135T>A 3137A>T), Y1024H (3156T>C 3158T>C), V1070L (3294G>T), V1086A (3343T>C 3344C>G), P1098E (3378C>G 3379C>A), R1099K (3382G>A 3383A>G), A1133S (3483G>T), V1154I (3546G>A), N1202D (3690A>G), Q1205K (3699C>A), Q1209D (3711C>G 3713A>T), I1250V (3834A>G), Y1295F (3970A>T), L1297I (3975C>A), S1299N (3981T>A 3982C>A 3983T>C), Q1317S (4035C>A 4036A>G 4037A>T), P1320K (4044C>A 4045C>A 4046C>A), K1323R (4054A>G 4055A>G), K1328L (4068A>C 4069A>T 4070G>A), F1337Y (4096T>A 4097T>C), E1398Q (4278G>C 4280G>A), N1401D (4287A>G 4289T>C), K1436R (4393A>G), A1437S (4395G>T)
Codon mutations:AAT6AAC (104T>C), TTG8TTA (110G>A), AGA12AGG (122A>G), CAG17CAA (137G>A), TCC18TCT (140C>T), GCC24GCT (158C>T), TAT25TAC (161T>C), CGA29AGA (171C>A), GTA31GTG (179A>G), CTT32CTC (182T>C), AAA33AAG (185A>G), TCT35TCC (191T>C), AAT38AAC (200T>C), TAC41TAT (209C>T), GAT45GAC (221T>C), CTT54TTA (246C>T 248T>A), ATT58GTA (258A>G 260T>A), CAC66CAT (284C>T), ACA67ACT (287A>T), GCC69GCG (293C>G), GCC71GCT (299C>T), GTA73GTT (305A>T), GTC74GTG (308C>G), CGT77AGA (315C>A 317T>A), CTT79CTA (323T>A), CAT84CAC (338T>C), CCT87CCC (347T>C), AAA88AAG (350A>G), GAT89GAC (353T>C), GAA90GAG (356A>G), GTA92GTT (362A>T), ACT93ACC (365T>C), ATC95ATT (371C>T), CGT99AGA (381C>A 383T>A), AAG101AAA (389G>A), CGT103AGA (393C>A 395T>A), AGA106CGA (402A>C), GTG110GTA (416G>A), GTC114GTT (428C>T), GTC116GTT (434C>T), CAT118CAC (440T>C), AAC119AAT (443C>T), ATT120ATA (446T>A), CCA122CCC (452A>C), AAA123AAG (455A>G), GAC124GAT (458C>T), GAA130GAG (476A>G), GAG131GAA (479G>A), TCA134TCT (488A>T), ACC135ACT (491C>T), AGC136AGT (494C>T), TTT137TTC (497T>C), GTT139GTG (503T>G), GAT140AAC (504G>A 506T>C), ACG141ACC (509G>C), AGA142AGG (512A>G), GCA144GCT (518A>T), ATT146ATC (524T>C), TCA147TCC (527A>C), CAC151CAT (539C>T), TTT152TTC (542T>C), CCT155CCA (551T>A), ACT159ACC (563T>C), TTG161CTC (567T>C 569G>C), CAA166CAC (584A>C), AAC167AAT (587C>T), TTG171CTG (597T>C), GTT175GTC (611T>C), GTA176GTT (614A>T), CTA177TTA (615C>T), GTG179GTT (623G>T), GCT181GCC (629T>C), ATA182ATC (632A>C), AGA184AAA (637G>A), CAG185CAA (641G>A), CTA188TTA (648C>T), TTC189TTT (653C>T), CCT190CCA (656T>A), ATT192ATA (662T>A), AAC196AAT (674C>T), GGC201GGT (689C>T), CCA206CCT (704A>T), GGA207GGT (707A>T), TCA208TCT (710A>T), CAC209CAT (713C>T), GGT211GGA (719T>A), TAT214TAC (728T>C), TTC215TTT (731C>T), CAC216CAT (734C>T), AAA217AAG (737A>G), ACC220ACA (746C>A), CTA221TTA (747C>T), GAA222GAC (752A>C), ATT230GTT (774A>G), GGA231GGC (779A>C), CAT232CAG (782T>G), GAT233GAC (785T>C), CCA234CCC (788A>C), TTG235TTA (791G>A), GGT237GGA (797T>A), TTA238CTC (798T>C 800A>C), AAA239CGA (801A>C 802A>G), ATT242ATA (812T>A), ACG243ACC (815G>C), CTT250TTA (834C>T 836T>A), GGT251GGA (839T>A), CAC254CAT (848C>T), AAC262AAT (872C>T), GAG264GAA (878G>A), ACG265ACA (881G>A), CCG266CCT (884G>T), CTA267TTA (885C>T), AAG273AAA (905G>A), AGT275AGC (911T>C), ACA278ACC (920A>C), TTC279TTT (923C>T), CCA280CCT (926A>T), AAT281AAC (929T>C), ATA282ATC (932A>C), CGA286CAA (943G>A), CAC287CAT (947C>T), GTC288GTT (950C>T), AAA292AAG (962A>G), CCT293CCC (965T>C), CCT295CCA (971T>A), TCA297TCC (977A>C), GCC299GCA (983C>A), ATA300ATT (986A>T), TAC303TAT (995C>T), GTG306GTC (1004G>C), TCA308TCT (1010A>T), GTA309GTC (1013A>C), AAA311AAG (1019A>G), GTT312GTG (1022T>G), ACG313ACA (1025G>A), ATA317ATC (1037A>C), GCC319GCG (1043C>G), AAG320AAA (1046G>A), GTT321GTA (1049T>A), AGA322AGG (1052A>G), CTG324CTT (1058G>T), ATT325ATA (1061T>A), TCC326TCT (1064C>T), ACT327ACA (1067T>A), GAG329GAA (1073G>A), CTA330CTT (1076A>T), CTC338CTT (1100C>T), ACG339ACA (1103G>A), CAC340CAT (1106C>T), GTT341ATT (1107G>A), GTA342GTC (1112A>C), ACA346GCA (1122A>G), GTG348GTC (1130G>C), CAA350GAA (1134C>G), CTG351CTA (1139G>A), TCA352AGC (1140T>A 1141C>G 1142A>C), TCT353TCA (1145T>A), AAT355AAC (1151T>C), GAT356GAC (1154T>C), AAC359AAT (1163C>T), TCC363TCA (1175C>A), TTC365TTT (1181C>T), CTG369CTT (1193G>T), CAC375CAT (1211C>T), TTC384TTT (1238C>T), AAG387AAA (1247G>A), GAC389GAT (1253C>T), CTG393CTT (1265G>T), CTC394TTA (1266C>T 1268C>A), ACA395ACT (1271A>T), GAT401GAC (1289T>C), TTT402TTC (1292T>C), TCC403TCT (1295C>T), TAT404TAC (1298T>C), ACT405ACC (1301T>C), AAG407AAA (1307G>A), CTT411TTA (1317C>T 1319T>A), GTA412GTT (1322A>T), ACT414GCT (1326A>G), GCT418GAA (1339C>A 1340T>A), ATA419ATT (1343A>T), GGA420GGC (1346A>C), CAA421CAG (1349A>G), ATA423ATC (1355A>C), AGC424TGT (1356A>T 1358C>T), AAT425AAA (1361T>A), GCA426GCT (1364A>T), GCT427GCG (1367T>G), TAT430TAC (1376T>C), AGG434AGA (1388G>A), CAG435CAA (1391G>A), CTG436TTG (1392C>T), ACT437ACC (1397T>C), CAA438AAT (1398C>A 1400A>T), TTG439TTA (1403G>A), AAA442CAA (1410A>C), GGT443GGC (1415T>C), ACA444GCA (1416A>G), ATA445GTA (1419A>G), TCC446ACA (1422T>A 1424C>A), GCA448GCT (1430A>T), TTT450TTC (1436T>C), GAA451AAA (1437G>A), CAG452GAA (1440C>G 1442G>A), AGA453GCG (1443A>G 1444G>C 1445A>G), GAA454GAC (1448A>C), CCT455CAG (1450C>A 1451T>G), GAA456CAT (1452G>C 1454A>T), ATA457GTG (1455A>G 1457A>G), ACT458GAG (1458A>G 1459C>A 1460T>G), GAG461CAC (1467G>C 1469G>C), GAG463GAC (1475G>C), GAA465GAG (1481A>G), ACT466TTT (1482A>T 1483C>T), AGG467AAA (1486G>A 1487G>A), CCC468TCC (1488C>T), CAA469ACT (1491C>A 1492A>C 1493A>T), GTG470GTT (1496G>T), TGC472CCC (1500T>C 1501G>C), GTT473CAC (1503G>C 1504T>A 1505T>C), ACT474CGG (1506A>C 1507C>G 1508T>G), AAT475AGC (1510A>G 1511T>C), AAT477GAA (1515A>G 1517T>A), GCA479GCC (1523A>C), GTA480ATC (1524G>A 1526A>C), AAA481AAC (1529A>C), TTA483CTT (1533T>C 1535A>T), GGT484GGC (1538T>C), CTT485ATT (1539C>A), TCT486GAG (1542T>G 1543C>A 1544T>G), GCA487ATT (1545G>A 1546C>T 1547A>T), CTT488AAT (1548C>A 1549T>A), GAT489GAG (1553T>G), GAA490GAT (1556A>T), CAG491GTA (1557C>G 1558A>T 1559G>A), CAA493GAA (1563C>G), TGT494AGT (1566T>A), TCA495TCC (1571A>C), TCT496GGC (1572T>G 1573C>G 1574T>C), TCT497ACT (1575T>A), AGC498AAT (1579G>A 1580C>T), AGT499GAA (1581A>G 1582G>A 1583T>A), CAT500ACA (1584C>A 1585A>C 1586T>A), ATA501TTG (1587A>T 1589A>G), CCC502CTT (1591C>T 1592C>T), TGC503AAC (1593T>A 1594G>A), TCC507TCT (1607C>T), ACT511TCA (1617A>T 1619T>A), GAT512TCT (1620G>T 1621A>C), GAC513GCT (1624A>C 1625C>T), GAC514GAA (1628C>A), AAT515CAT (1629A>C), GCT516GTG (1633C>T 1634T>G), GCG517CAA (1635G>C 1636C>A 1637G>A), GCC518GCT (1640C>T), ATT519GTT (1641A>G), CAT520CAA (1646T>A), GAA523GAG (1655A>G), CTA525TTA (1659C>T), TTG526CTC (1662T>C 1664G>C), GAA528AAC (1668G>A 1670A>C), CCG529CCC (1673G>C), ATA530GAA (1674A>G 1675T>A), ATA531GCG (1677A>G 1678T>C 1679A>G), GCT532GCA (1682T>A), CCT533CCA (1685T>A), CAA534ATA (1686C>A 1687A>T), CTC535TTG (1689C>T 1691C>G), CCA536CCC (1694A>C), GCA537CCT (1695G>C 1697A>T), TTG538GCA (1698T>G 1699T>C 1700G>A), CCA539CAT (1702C>A 1703A>T), CAC540GTT (1704C>G 1705A>T 1706C>T), AAG541AAA (1709G>A), GCC544GCT (1718C>T), AGT545AGC (1721T>C), TAT546CTT (1722T>C 1723A>T), GCT547GCA (1727T>A), TCA548TCT (1730A>T), TCA551TCC (1739A>C), TCC552AGC (1740T>A 1741C>G), ATG553ACT (1744T>C 1745G>T), AAG554AAA (1748G>A), GAG557GAA (1757G>A), ATT558ATC (1760T>C), GAG559GAA (1763G>A), AAC560GAT (1764A>G 1766C>T), ATT562GTG (1770A>G 1772T>G), GAG564AAG (1776G>A), CTT565CTG (1781T>G), ATC567ATA (1787C>A), TCA568CAA (1788T>C 1789C>A), CGG569AGA (1791C>A 1793G>A), AAG570AAT (1796G>T), AAT572GCT (1800A>G 1801A>C), AAT573AGT (1804A>G), AAT573_GTG574insTGCAGC (1805_1806insTGCAGC), GTG574TAC (1806G>T 1807T>A 1808G>C), CAG575CTT (1810A>T 1811G>T), ACT577CCA (1815A>C 1817T>A), ACT578AAT (1819C>A), CAT579AAG (1821C>A 1823T>G), GAT580GAA (1826T>A), TAC581TTG (1828A>T 1829C>G), CAT582del (1830_1832delCAT), GCA583TCA (1833G>T), GTT584AAA (1836G>A 1837T>A 1838T>A), TTT585CCC (1839T>C 1840T>C 1841T>C), GAC586AAG (1842G>A 1844C>G), ACA587GCT (1845A>G 1847A>T), CAG589GAT (1851C>G 1853G>T), AGC590AAC (1855G>A), TCC591_GGA592del (1857_1862delTCCGGA), GAT593AAT (1863G>A), CCA595CCC (1871A>C), AAA597AAT (1877A>T), GCA598GCT (1880A>T), ATT600ATC (1886T>C), CTT602TTG (1890C>T 1892T>G), CTG603CTT (1895G>T), AAG609AAA (1913G>A), GAC611GAT (1919C>T), CTT613TTA (1923C>T 1925T>A), AGT616GGC (1932A>G 1934T>C), CCG617CCA (1937G>A), GGC619GGT (1943C>T), AAA620AAC (1946A>C), GTG621TTG (1947G>T), ATT622ATA (1952T>A), CCA624CCC (1958A>C), CAG626CAA (1964G>A), ATC628ATT (1970C>T), AAT629AAC (1973T>C), AAC630AAT (1976C>T), AAA631TCA (1977A>T 1978A>C), ACA632CAG (1980A>C 1981C>A 1982A>G), CCA633CCT (1985A>T), GAG636GAC (1994G>C), TAC637TAT (1997C>T), CCA638CCG (2000A>G), TCC639TCT (2003C>T), AGC640TCT (2004A>T 2005G>C 2006C>T), ATT641CTG (2007A>C 2009T>G), CCT642CCA (2012T>A), GCA643TGT (2013G>T 2014C>G 2015A>T), GAT644GAA (2018T>A), AAT647GAA (2025A>G 2027T>A), ACA648ACT (2030A>T), CTG649TTG (2031C>T), CGA650AGG (2034C>A 2036A>G), AAC651AAA (2039C>A), AAA653AAG (2045A>G), AGA654CGT (2046A>C 2048A>T), GCA655GCT (2051A>T), GTG656GTC (2054G>C), ATT659ATC (2063T>C), CCT660CCA (2066T>A), ATT661ATA (2069T>A), CAT663CAC (2075T>C), CGA664AGG (2076C>A 2078A>G), GCA666GCT (2084A>T), AGC670AGT (2096C>T), GAT672GAC (2102T>C), ATC673ATA (2105C>A), AAC675AAT (2111C>T), AAT676AAC (2114T>C), AGG677AGA (2117G>A), ACC678ACT (2120C>T), TTA681CTT (2127T>C 2129A>T), TGT683TGC (2135T>C), TCC684AAC (2136T>A 2137C>A), TCA686AGC (2142T>A 2143C>G 2144A>C), AGG690AAA (2155G>A 2156G>A), AGT692AGC (2162T>C), GTT703GTC (2195T>C), TCT705TCA (2201T>A), GGA706GGT (2204A>T), GTA707GTT (2207A>T), ATT709ATA (2213T>A), GGC711GGT (2219C>T), TGT712TGC (2222T>C), GGC713GGA (2225C>A), GGC714GGT (2228C>T), GGA716GGC (2234A>C), TCA718TCC (2240A>C), CAA719CAG (2243A>G), TTT724TTC (2258T>C), CTC725TTG (2259C>T 2261C>G), ACT727ACA (2267T>A), CTT728TTG (2268C>T 2270T>G), GGC729GGT (2273C>T), GAC730GAT (2276C>T), TCT731TCA (2279T>A), GAC733GAT (2285C>T), TGC735TGT (2291C>T), ACA736ACT (2294A>T), GTG737GTT (2297G>T), GTT738GTA (2300T>A), GTG739GTA (2303G>A), CCA740CCC (2306A>C), CTC744CTT (2318C>T), GAT747GAC (2327T>C), GTG749GTA (2333G>A), TTG752CTC (2340T>C 2342G>C), TGT753CAT (2343T>C 2344G>A), AAG754AGA (2347A>G 2348G>A), CTA755TTG (2349C>T 2351A>G), GAA758GAG (2360A>G), CAC759CAT (2363C>T), ATT760ATC (2366T>C), GAA764GAG (2378A>G), CCA770CCT (2396A>T), GGA771GGC (2399A>C), TTC772TTT (2402C>T), GTT774ATT (2406G>A), ATC776ATA (2414C>A), GAC779GAT (2423C>T), ACT781ACC (2429T>C), AAA782AAG (2432A>G), GGT786GGC (2444T>C), GCC790GCA (2456C>A), TAT791TAC (2459T>C), TTG792CTA (2460T>C 2462G>A), TTC793TTT (2465C>T), GAA799GAG (2483A>G), ATT802ATA (2492T>A), GGA805GGT (2501A>T), GAC806GAT (2504C>T), TCG807TCT (2507G>T), CGG808AGG (2508C>A), AGT810AGC (2516T>C), GTA811GTG (2519A>G), TAT812TAC (2522T>C), GAG814GAA (2528G>A), TCC815TCT (2531C>T), GCA819GCG (2543A>G), GCC827GCT (2567C>T), GTC828GTT (2570C>T), GCT829GCA (2573T>A), TAT830TAC (2576T>C), TAT831TAC (2579T>C), AAC833AAT (2585C>T), TGT835TGC (2591T>C), GGA836GGT (2594A>T), TAC838TAT (2600C>T), CTA839TTA (2601C>T), ACA842ACT (2612A>T), GTT846GTC (2624T>C), CGC847CGT (2627C>T), TTG849TTA (2633G>A), AAT851AAC (2639T>C), AAG852AAA (2642G>A), CTA853CTT (2645A>T), GGT861GGA (2669T>A), CTC863TTG (2673C>T 2675C>G), ATT865ATC (2681T>C), ACC866ACT (2684C>T), GCC868GCT (2690C>T), AAT870CAT (2694A>C), GCT871GCC (2699T>C), CTA872TTA (2700C>T), TTG880TTA (2726G>A), GTG881GTT (2729G>T), CCC882CCT (2732C>T), AAG886AAA (2744G>A), CAA891TTA (2757C>T 2758A>T), ATA893ATT (2765A>T), GGG894GGA (2768G>A), CAC895CAT (2771C>T), GCC897TCC (2775G>T), TAC900TAT (2786C>T), GGG902GGT (2792G>T), TGT903TGC (2795T>C), GGG905GGT (2801G>T), CTT906TTA (2802C>T 2804T>A), ACT907ACA (2807T>A), CCG909CCC (2813G>C), AGA910AAG (2815G>A 2816A>G), GTC911GTA (2819C>A), TTG914CTC (2826T>C 2828G>C), GAC916GAT (2834C>T), ACA919ACG (2843A>G), CAC921CAT (2849C>T), TCA923TCT (2855A>T), AGG925AGA (2861G>A), GTG926GTT (2864G>T), ACT929ACC (2873T>C), CTC931CTG (2879C>G), TCC932TCT (2882C>T), AGA933CGT (2883A>C 2885A>T), GCT934GCA (2888T>A), GTG935GTT (2891G>T), TTT940TTC (2906T>C), ACA943ACT (2915A>T), GGC944GGT (2918C>T), CCA945CCC (2921A>C), TCT948TCA (2930T>A), GAC952GAT (2942C>T), GAG955GAA (2951G>A), GCA962GCC (2972A>C), TTT963TTC (2975T>C), ACT966GTC (2982A>G 2983C>T 2984T>C), TAC967TAT (2987C>T), GAG970GAA (2996G>A), ACA972ACT (3002A>T), CCC984CCA (3038C>A), GCT985ACT (3039G>A), GCT989GCA (3053T>A), CCA990CCT (3056A>T), TTG991GTT (3057T>G 3059G>T), ACT992ACA (3062T>A), CAC993CAT (3065C>T), TTT994TTC (3068T>C), GTG996GTA (3074G>A), TCA997GCA (3075T>G), AAC998AAT (3080C>T), GGC999GGA (3083C>A), TTG1002TTA (3092G>A), GAA1003GAG (3095A>G), AAG1004AAA (3098G>A), TCA1007TCT (3107A>T), GCG1008GCT (3110G>T), CTT1009TTG (3111C>T 3113T>G), GCA1014GCT (3128A>T), AGA1015AGG (3131A>G), GAG1016GAA (3134G>A), TTA1017ATT (3135T>A 3137A>T), GAT1019GAC (3143T>C), AAA1020AAG (3146A>G), CAC1021CAT (3149C>T), GGA1023GGC (3155A>C), TAT1024CAC (3156T>C 3158T>C), AAT1026AAC (3164T>C), GAA1031GAG (3179A>G), AAT1032AAC (3182T>C), CCA1033CCT (3185A>T), GTG1035GTC (3191G>C), CAG1039CAA (3203G>A), GCC1043GCG (3215C>G), GAT1045GAC (3221T>C), GAA1046GAG (3224A>G), CTT1048CTC (3230T>C), TTC1049TTT (3233C>T), GCA1051GCT (3239A>T), ATA1053ATT (3245A>T), CTT1057TTG (3255C>T 3257T>G), TCT1058TCC (3260T>C), ATT1059ATA (3263T>A), CCG1062CCT (3272G>T), GCC1064GCA (3278C>A), TTA1066CTC (3282T>C 3284A>C), CGA1067AGA (3285C>A), GTG1070TTG (3294G>T), CTA1071CTT (3299A>T), GAT1077GAC (3317T>C), ATC1078ATT (3320C>T), TTG1079CTC (3321T>C 3323G>C), TTT1080TTC (3326T>C), CAC1084CAT (3338C>T), GTC1086GCG (3343T>C 3344C>G), TTA1089TTG (3353A>G), GAC1092GAT (3362C>T), CCA1093CCT (3365A>T), GTG1094GTT (3368G>T), GAT1095GAC (3371T>C), TTC1096TTT (3374C>T), GAG1097GAA (3377G>A), CCA1098GAA (3378C>G 3379C>A), AGA1099AAG (3382G>A 3383A>G), ACA1100ACC (3386A>C), GAA1102GAG (3392A>G), ATA1103ATC (3395A>C), GTT1108GTG (3410T>G), AAT1110AAC (3416T>C), ACA1111ACT (3419A>T), TAC1112TAT (3422C>T), TTA1113CTT (3423T>C 3425A>T), CCA1116CCC (3434A>C), GCT1118GCC (3440T>C), AAC1119AAT (3443C>T), TTG1120CTT (3444T>C 3446G>T), GCT1123GCG (3455T>G), GCT1124GCA (3458T>A), AGC1125AGT (3461C>T), TCT1128TCA (3470T>A), CCT1129CCC (3473T>C), GAT1130GAC (3476T>C), TTC1131TTT (3479C>T), GCT1133TCT (3483G>T), AAC1134AAT (3488C>T), AAA1135AAG (3491A>G), ATT1136ATC (3494T>C), TCC1137TCA (3497C>A), CTG1138TTA (3498C>T 3500G>A), AAA1141AAG (3509A>G), GTC1145GTG (3521C>G), AAG1146AAA (3524G>A), TTA1151CTT (3537T>C 3539A>T), GGT1152GGA (3542T>A), GTC1154ATC (3546G>A), AAG1155AAA (3551G>A), AAG1157AAA (3557G>A), GGC1159GGT (3563C>T), ATT1162ATA (3572T>A), GCA1163GCT (3575A>T), TTC1165TTT (3581C>T), GTG1170GTC (3596G>C), GGG1174GGT (3608G>T), ACC1175ACT (3611C>T), AGA1178AGG (3620A>G), CTC1180TTA (3624C>T 3626C>A), AGA1181AGG (3629A>G), AAG1182AAA (3632G>A), AGA1184CGG (3636A>C 3638A>G), TTT1187TTC (3647T>C), CAA1188CAG (3650A>G), CAT1191CAC (3659T>C), ATT1192ATA (3662T>A), ACA1198ACC (3680A>C), AAT1202GAT (3690A>G), CTG1203CTC (3695G>C), AAC1204AAT (3698C>T), CAA1205AAA (3699C>A), GTT1207GTC (3707T>C), CAA1209GAT (3711C>G 3713A>T), GGT1210GGC (3716T>C), ACA1216ACC (3734A>C), GCT1217GCC (3737T>C), CAG1218CAA (3740G>A), GAT1221GAC (3749T>C), ACA1223ACT (3755A>T), GAC1226GAT (3764C>T), CAA1227CAG (3767A>G), GGT1231GGA (3779T>A), AAG1240AAA (3806G>A), TTC1243TTT (3815C>T), TTC1244TTT (3818C>T), AAT1245AAC (3821T>C), ATC1246ATT (3824C>T), CCT1247CCA (3827T>A), GCC1248GCT (3830C>T), GAC1249GAT (3833C>T), ATC1250GTC (3834A>G), GGA1253GGC (3845A>C), AAA1258AAG (3860A>G), TTG1259CTG (3861T>C), AAC1260AAT (3866C>T), GCC1261GCA (3869C>A), TTT1264TTC (3878T>C), GGC1266GGA (3884C>A), TTG1268CTC (3888T>C 3890G>C), TCC1269TCA (3893C>A), ATT1270ATA (3896T>A), AGG1272AGA (3902G>A), TTG1273CTT (3903T>C 3905G>T), CCA1278CCC (3920A>C), ACT1279ACA (3923T>A), GAT1281GAC (3929T>C), GCC1282GCT (3932C>T), ACA1284ACT (3938A>T), GAA1285GAG (3941A>G), TCA1287TCG (3947A>G), ATA1288ATT (3950A>T), TAT1290TAC (3956T>C), GCT1292GCC (3962T>C), TAC1295TTC (3970A>T), CTT1297ATT (3975C>A), GAT1298GAC (3980T>C), TCT1299AAC (3981T>A 3982C>A 3983T>C), ACA1300ACT (3986A>T), GTC1301GTT (3989C>T), CAG1303CAA (3995G>A), GTT1304GTG (3998T>G), GCT1306GCC (4004T>C), GGA1307GGT (4007A>T), GAT1308GAC (4010T>C), GAT1309GAC (4013T>C), GTC1316GTG (4034C>G), CAA1317AGT (4035C>A 4036A>G 4037A>T), AAA1319AAG (4043A>G), CCC1320AAA (4044C>A 4045C>A 4046C>A), TCT1321TCA (4049T>A), TTT1322TTC (4052T>C), AAA1323AGG (4054A>G 4055A>G), AAA1324AAG (4058A>G), CTA1325TTA (4059C>T), CAG1326CAA (4064G>A), AAC1327AAT (4067C>T), AAG1328CTA (4068A>C 4069A>T 4070G>A), CTT1329CTA (4073T>A), ACC1332ACT (4082C>T), AAG1334AAA (4088G>A), ACA1335ACG (4091A>G), CTA1336CTG (4094A>G), TTT1337TAC (4096T>A 4097T>C), GGT1343GGG (4115T>G), TAT1345TAC (4121T>C), TTC1348TTT (4130C>T), ACT1354ACA (4148T>A), CCT1355CCA (4151T>A), GGT1356GGG (4154T>G), ATC1358ATA (4160C>A), AAC1361AAT (4169C>T), CCT1362CCA (4172T>A), TTG1363CTT (4173T>C 4175G>T), GCT1367GCC (4187T>C), TCC1368TCA (4190C>A), TTG1371CTG (4197T>C), GAG1373GAA (4205G>A), GCA1374GCC (4208A>C), ATC1375ATT (4211C>T), TTA1378CTG (4218T>C 4220A>G), ACT1380ACA (4226T>A), GCT1381GCA (4229T>A), TCA1384TCT (4238A>T), GCC1386GCA (4244C>A), AAA1390AAG (4256A>G), GAT1397GAC (4277T>C), GAG1398CAA (4278G>C 4280G>A), CAC1400CAT (4286C>T), AAT1401GAC (4287A>G 4289T>C), TTA1403CTA (4293T>C), ACA1404ACC (4298A>C), CCA1405CCC (4301A>C), CAC1411CAT (4319C>T), CTT1413CTA (4325T>A), GTT1415GTG (4331T>G), CGG1416AGA (4332C>A 4334G>A), TTG1418CTT (4338T>C 4340G>T), AAG1420AAA (4346G>A), TTA1421CTC (4347T>C 4349A>C), CAC1422CAT (4352C>T), GGA1424GGC (4358A>C), GAA1425GAG (4361A>G), GCA1426GCC (4364A>C), AGA1428CGT (4368A>C 4370A>T), GGT1430GGG (4376T>G), GAA1431GAG (4379A>G), AAG1432AAA (4382G>A), AGC1433AGT (4385C>T), CCT1434CCA (4388T>A), AAA1436AGA (4393A>G), GCA1437TCA (4395G>T), ACA1438ACC (4400A>C), TGA1440TAA (4405G>A)
1235100%139786.6%235 (100%)203 (86.4%)0/0/0/01
Protein mutations:Q11L (4463A>T 4464A>G), H14K (4471C>A 4473C>A), P17H (4481C>A 4482A>C), L19I (4486C>A 4488C>T), S20N (4490G>A 4491T>C), V21T (4492G>A 4493T>C), T24I (4502C>T), Q62A (4615C>G 4616A>C 4617A>T), H77L (4660C>T 4661A>T 4662T>G), L91P (4703T>C 4704A>T), V112T (4765G>A 4766T>C 4767C>A), H114N (4771C>A 4773T>C), E129A (4817A>C 4818G>T), I130L (4819A>C 4821T>A), V140E (4850T>A 4851C>G), K144V (4861A>G 4862A>T), E145Q (4864G>C), I148T (4874T>C 4875C>A), F151Y (4883T>A), N153D (4888A>G 4890C>T), E156A (4898A>C), T160S (4909A>T), E168K (4933G>A), D172E (4947C>A), S175G (4954T>G 4955C>G), V179E (4967T>A), A192S (5005G>A 5006C>G 5007A>T), T194V (5011A>G 5012C>T 5013A>T), A203G (5039C>G 5040A>T), A206Q (5047G>C 5048C>A 5049T>A), H221S (5092C>T 5093A>C 5094C>A), N233D (5128A>G)
Codon mutations:CTG6TTG (4447C>T), ATT7ATC (4452T>C), CAA11CTG (4463A>T 4464A>G), TTG12TTA (4467G>A), CAC14AAA (4471C>A 4473C>A), TTC15TTT (4476C>T), GAG16GAA (4479G>A), CCA17CAC (4481C>A 4482A>C), AAA18AAG (4485A>G), CTC19ATT (4486C>A 4488C>T), AGT20AAC (4490G>A 4491T>C), GTT21ACT (4492G>A 4493T>C), ACC24ATC (4502C>T), ATA25ATT (4506A>T), GCA31GCT (4524A>T), GGC32GGA (4527C>A), ACT37ACA (4542T>A), TTA38TTG (4545A>G), GCT45GCA (4566T>A), TGC57TGT (4602C>T), TAT58TAC (4605T>C), CAA62GCT (4615C>G 4616A>C 4617A>T), AAC63AAT (4620C>T), TTA70CTT (4639T>C 4641A>T), TGC72TGT (4647C>T), CCC74CCA (4653C>A), CAT77TTG (4660C>T 4661A>T 4662T>G), GAT79GAC (4668T>C), GTC81GTT (4674C>T), GAT82GAC (4677T>C), TAT84TAC (4683T>C), TTG86CTC (4687T>C 4689G>C), CTA87TTA (4690C>T), CTA91CCT (4703T>C 4704A>T), TTG95CTA (4714T>C 4716G>A), GCT96GCC (4719T>C), ATC97ATT (4722C>T), CAA103CAG (4740A>G), ACA105ACT (4746A>T), GAG108GAA (4755G>A), AGA109AGG (4758A>G), CTT110TTG (4759C>T 4761T>G), GTC112ACA (4765G>A 4766T>C 4767C>A), CCA113CCC (4770A>C), CAT114AAC (4771C>A 4773T>C), ACT116ACA (4779T>A), ACT120ACA (4791T>A), CAT121CAC (4794T>C), AGA122CGA (4795A>C), GGA124GGC (4803A>C), AAG125AAA (4806G>A), TCA126TCC (4809A>C), GAG129GCT (4817A>C 4818G>T), ATT130CTA (4819A>C 4821T>A), TTG131CTA (4822T>C 4824G>A), AAA133AAG (4830A>G), CTG134TTA (4831C>T 4833G>A), GAC136GAT (4839C>T), AAT138AAC (4845T>C), ATA139ATT (4848A>T), GTC140GAG (4850T>A 4851C>G), GTT142GTC (4857T>C), AAG143AAA (4860G>A), AAA144GTA (4861A>G 4862A>T), GAA145CAA (4864G>C), ATC148ACA (4874T>C 4875C>A), GTT149GTA (4878T>A), TTC151TAC (4883T>A), AAC153GAT (4888A>G 4890C>T), TTT155TTC (4896T>C), GAA156GCA (4898A>C), GTT157GTG (4902T>G), ACT160TCT (4909A>T), GAG161GAA (4914G>A), CAT162CAC (4917T>C), ATC163ATT (4920C>T), GCC165GCT (4926C>T), TCT166TCA (4929T>A), GAA168AAA (4933G>A), GTC170GTT (4941C>T), GAC172GAA (4947C>A), GTT174GTA (4953T>A), TCT175GGT (4954T>G 4955C>G), GAC176GAT (4959C>T), GTG178GTT (4965G>T), GTG179GAG (4967T>A), ACC180ACT (4971C>T), ACT181ACA (4974T>A), TCA183TCT (4980A>T), GAG184GAA (4983G>A), GCA187GCT (4992A>T), GGA188GGT (4995A>T), CTT189CTC (4998T>C), GCA192AGT (5005G>A 5006C>G 5007A>T), ACA194GTT (5011A>G 5012C>T 5013A>T), TGC198TGT (5025C>T), ACA199ACC (5028A>C), TTG201CTT (5032T>C 5034G>T), GCC202GCT (5037C>T), GCA203GGT (5039C>G 5040A>T), GCT206CAA (5047G>C 5048C>A 5049T>A), GCT210GCC (5061T>C), AAG211AAA (5064G>A), ACT212ACC (5067T>C), ATC214ATT (5073C>T), TCT215TCA (5076T>A), CTG216CTC (5079G>C), ACC220ACT (5091C>T), CAC221TCA (5092C>T 5093A>C 5094C>A), AAA222AAG (5097A>G), ACC224ACA (5103C>A), GGG226GGT (5109G>T), AAC233GAC (5128A>G)
1124100%83493.1%124 (100%)115 (92.7%)0/0/0/01
Protein mutations:F97I (5405T>A), T100N (5415C>A), S105H (5429T>C 5430C>A), N114Q (5456A>C 5458C>A), N115T (5460A>C 5461T>A), T116G (5462A>G 5463C>G 5464A>T), P118S (5468C>T), L119V (5471T>G), S120P (5474T>C)
Codon mutations:CTA4CTG (5128A>G), GAC9GAT (5143C>T), CTC10CTT (5146C>T), ACA13ACG (5155A>G), TAC14TAT (5158C>T), GCC18GCT (5170C>T), ATT19ATA (5173T>A), GCT20GCC (5176T>C), TTC21TTT (5179C>T), TTG22CTA (5180T>C 5182G>A), TTG23CTG (5183T>C), AAT31AAC (5209T>C), AGC32AGT (5212C>T), CAC33CAT (5215C>T), TAC34TAT (5218C>T), CCT36CCA (5224T>A), GCT38GCA (5230T>A), GGA39GGT (5233A>T), GAC40GAT (5236C>T), AAC41AAT (5239C>T), CGT44AGA (5246C>A 5248T>A), TTG45CTA (5249T>C 5251G>A), CCT46CCC (5254T>C), GGC49GGT (5263C>T), CAA50CAG (5266A>G), GGC54GGA (5278C>A), ACC55ACT (5281C>T), AAA56AAG (5284A>G), ATA58ATT (5290A>T), TCC59TCT (5293C>T), TAT60TAC (5296T>C), CCA62CCG (5302A>G), CAA63CAG (5305A>G), CAG64CAA (5308G>A), CAG65CAA (5311G>A), TCA66TCC (5314A>C), CAT69CAC (5323T>C), TCT70TCA (5326T>A), AAA73AAG (5335A>G), TTA74CTT (5336T>C 5338A>T), CTC83CTT (5365C>T), ACG84ACA (5368G>A), TTG85CTG (5369T>C), TTT97ATT (5405T>A), AGT98AGC (5410T>C), ACT100AAT (5415C>A), TCT105CAT (5429T>C 5430C>A), TAT107TAC (5437T>C), TCA111TCT (5449A>T), AAC114CAA (5456A>C 5458C>A), AAT115ACA (5460A>C 5461T>A), ACA116GGT (5462A>G 5463C>G 5464A>T), CCA118TCA (5468C>T), TTG119GTG (5471T>G), TCA120CCA (5474T>C), GGC121GGT (5479C>T)
185100%45277.8%85 (100%)67 (78.8%)0/0/0/01
Protein mutations:S9L (5365C>T), R10H (5368G>A 5369T>C), V24A (5410T>C), L26I (5415C>A), L31I (5430C>A), I33T (5437T>C), Q37L (5449A>T), T40K (5458C>A), I41Q (5460A>C 5461T>A 5462A>G), H42V (5463C>G 5464A>T), H44Q (5471T>G), A47V (5479C>T), S51G (5490A>G), E60P (5517G>C 5518A>C 5519G>A), K81Q (5580A>C), F82L (5585T>G), E83* (5586G>T 5587A>G), *85H (5592T>C 5594G>T)
Codon mutations:TCA9TTA (5365C>T), CGT10CAC (5368G>A 5369T>C), GCT22GCA (5405T>A), GTC24GCC (5410T>C), CTA26ATA (5415C>A), ATT30ATC (5429T>C), CTT31ATT (5430C>A), ATA33ACA (5437T>C), CAG37CTG (5449A>T), CCA39CCC (5456A>C), ACA40AAA (5458C>A), ATA41CAG (5460A>C 5461T>A 5462A>G), CAC42GTC (5463C>G 5464A>T), AAC43AAT (5468C>T), CAT44CAG (5471T>G), TGT45TGC (5474T>C), GCC47GTC (5479C>T), AGT51GGT (5490A>G), GCT52GCA (5495T>A), GCA53GCC (5498A>C), GTC55GTT (5504C>T), GAG60CCA (5517G>C 5518A>C 5519G>A), CCA63CCC (5528A>C), GTG65GTT (5534G>T), ATA69ATC (5546A>C), AAA81CAA (5580A>C), TTT82TTG (5585T>G), GAA83TGA (5586G>T 5587A>G), TAG85CAT (5592T>C 5594G>T)
1238100%147894.4%238 (100%)220 (92.4%)0/0/0/01
Protein mutations:P2E (5636C>G 5637C>A 5638T>A), D3N (5639G>A), T4Q (5642A>C 5643C>A), T5P (5645A>C 5647A>T), P6T (5648C>A 5650T>A), V7A (5652T>C), A8S (5654G>T), A9N (5657G>A 5658C>A), T10P (5660A>C 5662T>A), S12D (5666A>G 5667G>A), K18A (5684A>G 5685A>C 5686A>T), D19Q (5687G>C 5689T>A), K23Q (5699A>C 5701A>G), A24S (5702G>A 5703C>G 5704T>C), S26A (5708T>G 5710T>C), V43I (5759G>A), V133I (6029G>A), I143V (6059A>G 6061T>G)
Codon mutations:CCT2GAA (5636C>G 5637C>A 5638T>A), GAC3AAC (5639G>A), ACA4CAA (5642A>C 5643C>A), ACA5CCT (5645A>C 5647A>T), CCT6ACA (5648C>A 5650T>A), GTT7GCT (5652T>C), GCT8TCT (5654G>T), GCC9AAC (5657G>A 5658C>A), ACT10CCA (5660A>C 5662T>A), AGT12GAT (5666A>G 5667G>A), CCC15CCA (5677C>A), ACA16ACT (5680A>T), GCC17GCT (5683C>T), AAA18GCT (5684A>G 5685A>C 5686A>T), GAT19CAA (5687G>C 5689T>A), AAA23CAG (5699A>C 5701A>G), GCT24AGC (5702G>A 5703C>G 5704T>C), CCT25CCA (5707T>A), TCT26GCC (5708T>G 5710T>C), CCC31CCT (5725C>T), AGT36TCC (5738A>T 5739G>C 5740T>C), CTC37CTA (5743C>A), AAA42AAG (5758A>G), GTC43ATC (5759G>A), AAG44AAA (5764G>A), TAT45TAC (5767T>C), GTC46GTG (5770C>G), TCC47TCA (5773C>A), ACC48ACT (5776C>T), GTG49GTC (5779G>C), ACC50ACT (5782C>T), TCC51TCA (5785C>A), GTG52GTT (5788G>T), ACA54ACG (5794A>G), CCA55CCT (5797A>T), GAA59GAG (5809A>G), CTA61CTT (5815A>T), AAA63AAG (5821A>G), TTC65TTT (5827C>T), ACC66ACT (5830C>T), GCT67GCC (5833T>C), GGC69GGT (5839C>T), CTT70TTA (5840C>T 5842T>A), GCC71GCA (5845C>A), ACT75ACC (5857T>C), GGT76GGA (5860T>A), CCG77CCT (5863G>T), GAT81GAC (5875T>C), CTA82CTC (5878A>C), GCA85GCT (5887A>T), CAG90CAA (5902G>A), TCT92TCA (5908T>A), TCG94TCT (5914G>T), CAG96CAA (5920G>A), CTG97CTT (5923G>T), ATT98ATA (5926T>A), GGA99GGT (5929A>T), GCT100GCC (5932T>C), ACC101ACA (5935C>A), CCT102CCA (5938T>A), GCA106GCT (5950A>T), CTA107TTG (5951C>T 5953A>G), TCA108TCT (5956A>T), CGC109AGA (5957C>A 5959C>A), CGA110CGT (5962A>T), GCC111GCA (5965C>A), GCT114GCA (5974T>A), CGA118CGT (5986A>T), ATA121ATC (5995A>C), ACC122ACA (5998C>A), AGG124AGA (6004G>A), TTT126TTC (6010T>C), TAC129TAT (6019C>T), GCC131GCA (6025C>A), GTT133ATT (6029G>A), CTT138CTG (6046T>G), CTC139TTA (6047C>T 6049C>A), AAC142AAT (6058C>T), ATT143GTG (6059A>G 6061T>G), CCA145CCT (6067A>T), GCA146GCC (6070A>C), AAT147AAC (6073T>C), GCC149GCA (6079C>A), CTT151TTG (6083C>T 6085T>G), GGT152GGC (6088T>C), TAC153TAT (6091C>T), CAA154CAG (6094A>G), ACA157ACC (6103A>C), AAA158AAG (6106A>G), GCA161GCT (6115A>T), TTC165TTT (6127C>T), ACC169ACA (6139C>A), AAC170AAT (6142C>T), CCT171CCA (6145T>A), GCC172GCT (6148C>T), AGC173AGT (6151C>T), CTG174CTA (6154G>A), GCT177GCA (6163T>A), GGT179GGC (6169T>C), CTT180CTA (6172T>A), CCA184CCC (6184A>C), GAA188GAG (6196A>G), CTA189CTT (6199A>T), TCC193TCG (6211C>G), GTA194GTT (6214A>T), AAG196AAA (6220G>A), TAC197TAT (6223C>T), TTG200CTT (6230T>C 6232G>T), GCT201GCC (6235T>C), AGG202CGC (6236A>C 6238G>C), CAA203CAG (6241A>G), AAG204AAA (6244G>A), ATC205ATA (6247C>A), ACA207ACT (6253A>T), AAT209AAC (6259T>C), TAT210TAC (6262T>C), ATT211ATC (6265T>C), ACA213ACC (6271A>C), GGA215GGT (6277A>T), GTC217GTT (6283C>T), GGA220GGT (6292A>T), GGA223GGC (6301A>C), GGA224GGC (6304A>C), GCT225GCC (6307T>C), ACC227ACT (6313C>T), GCG230GCA (6322G>A), ATA231ATT (6325A>T), GAC232GAT (6328C>T), CCC234CCT (6334C>T)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43