Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Limestonevirus limestone
Assembly
152427 (1 contig(s))
517.7
729118
47045.94 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
304761.0 (NT) + 324923.0 (AA) = 629684.0
99.9909
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 1 | 152427 | 100% | 304761 | 99.9% | 152407 (99.9%) | 152407 (99.9%) | 6/20 | |
| Mutations: | 24528_24541delCCCCCCCCCCCACC, 109088_109089insTTTTTT, 109186_109191delTTTTTT | ||||||||