Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Limestonevirus RC2014
Assembly
137632 (39 contig(s))
388.3
498422
32160.40 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
275192.0 (NT) + 280627.0 (AA) = 555819.0
99.9829
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 20 | 155346 | 88.6% | 275192 | 99.9% | 137632 (100%) | 137614 (99.9%) | 0/0 | |
| Mutations: | 18683T>C, 25555A>C, 26335C>T, 40756C>G, 69946G>T, 80439A>G, 83101C>A, 85545A>G, 85548G>A, 85641G>A, 86315A>G, 117492T>C, 118556G>A, 132068A>G, 132079C>T, 146049A>G, 146065T>C, 151445T>C | ||||||||