Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 5)

Assembly

1614 (1 contig(s))
23447.3
336717
21726.48 rpm (after QC)
0
de novo + reference guided assembly
Bcf Tools

Coverage Map

Variant Tables

Assignment

Rotavirus A (Taxonomy ID: 28875)
54.7529
38.8211
1
1

Alignment

segment 5
156.0 (NT) + 1504.0 (AA) = 1660.0
25.7604
Global, seeded, nucleotide + amino acids (AGA)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT11614100%1565.3%1554 (94.9%)864 (52.7%)24/60
Mutations:10T>A, 26T>G, 36T>G, 48T>C, 51A>T, 54C>T, 56T>A, 64C>A, 65G>A, 66T>A, 68G>A, 69A>G, 72A>G, 74C>A, 76G>A, 77C>A, 78T>G, 85C>A, 87G>T, 88A>T, 89G>T, 91T>G, 93A>G, 94T>C, 95G>T, 99C>A, 100A>C, 102T>A, 105T>A, 112T>G, 113C>A, 115A>G, 116T>A, 117T>A, 120C>G, 122T>G, 128T>C, 129T>A, 132T>A, 134A>T, 135T>G, 136G>A, 138G>A, 142A>T, 143T>A, 147G>A, 150G>A, 162A>T, 172A>T, 173T>A, 174A>T, 175G>A, 177T>A, 178G>A, 183A>G, 186C>A, 187C>T, 192T>C, 193T>A, 194A>G, 195T>A, 198T>G, 202T>G, 204A>T, 205T>C, 207G>A, 208C>T, 209C>A, 210G>C, 216T>A, 219C>T, 220A>C, 222A>G, 228T>C, 229G>A, 230T>G, 235A>T, 237C>T, 239G>A, 240A>C, 243A>G, 246C>T, 250C>T, 252T>A, 255C>T, 256A>G, 258T>A, 264T>C, 273T>G, 275A>G, 276G>A, 277C>A, 279T>G, 280A>C, 285T>A, 286G>T, 288G>T, 292C>G, 295C>G, 296C>T, 298A>G, 300T>A, 303C>A, 306A>G, 309C>A, 310A>G, 312A>T, 313T>A, 316C>G, 318G>A, 319T>G, 321T>G, 322A>C, 324C>G, 325A>C, 328G>A, 329A>C, 331T>A, 336C>T, 337A>G, 339T>A, 341T>C, 342A>G, 343A>T, 345A>G, 354T>A, 360T>A, 363A>G, 364G>T, 366A>G, 367A>G, 369T>G, 371G>A, 372A>T, 378T>C, 379G>A, 380A>T, 383G>A, 384A>C, 385A>T, 386T>C, 387G>T, 388A>G, 390A>G, 393G>A, 396A>G, 397A>C, 399A>T, 402A>G, 412C>G, 418A>T, 419A>T, 420A>G, 421A>T, 423T>A, 438T>C, 441G>A, 444G>A, 445C>A, 447C>G, 453T>A, 460A>C, 462T>A, 465T>A, 466G>T, 467C>T, 468T>G, 469G>A, 471A>T, 472T>A, 474T>A, 477G>T, 478T>C, 481_483delGAT, 486A>G, 487A>G, 493C>G, 495T>A, 502G>A, 504T>A, 510G>A, 512T>A, 513A>C, 519G>T, 520A>T, 521A>G, 522A>C, 523T>A, 524C>T, 525A>G, 527T>A, 528C>G, 529A>C, 530G>A, 534T>A, 536T>A, 537A>C, 538T>C, 540T>A, 541G>A, 543T>A, 548A>T, 549T>C, 550A>C, 551G>A, 553A>T, 556G>A, 561C>T, 562T>C, 564T>A, 565A>C, 568A>G, 570T>A, 571G>A, 575T>A, 585A>G, 586T>C, 588G>A, 591T>A, 599T>G, 600T>A, 603C>T, 606T>C, 607A>C, 608C>A, 609A>T, 618C>A, 619A>C, 621T>C, 622C>T, 628A>G, 631G>A, 632A>T, 633G>A, 637A>C, 638G>A, 640A>C, 642C>A, 643C>G, 645T>G, 651A>T, 652A>T, 653A>T, 656A>G, 660C>T, 663C>T, 664C>T, 665A>C, 667T>A, 668T>A, 676C>T, 678G>T, 679C>T, 680C>T, 682T>A, 683C>G, 684A>T, 685T>A, 686C>A, 688A>G, 689A>G, 690A>G, 691C>A, 692T>A, 693A>G, 697C>A, 698A>G, 700A>T, 702T>G, 703T>A, 704A>G, 706T>A, 707T>G, 708T>G, 709T>A, 710C>G, 711A>T, 717T>C, 718A>T, 720T>A, 721_723delAAA, 726A>T, 728C>G, 730G>C, 732G>T, 735T>G, 736T>G, 737T>A, 738T>A, 739A>G, 743C>G, 744T>A, 745T>C, 749C>G, 750A>T, 751A>C, 752A>C, 756G>A, 757C>T, 760G>T, 761G>T, 764G>T, 765A>G, 766T>C, 767C>A, 769A>G, 771A>G, 772T>G, 773A>T, 774C>A, 775A>C, 777A>T, 780T>C, 780_781insTGCATCAGTATACAC, 781G>A, 785C>A, 789A>T, 791T>G, 793A>G, 795T>A, 800G>A, 801A>T, 802G>A, 804T>A, 806A>C, 807A>G, 809T>G, 810G>T, 811G>A, 812A>C, 817T>A, 818A>T, 819T>A, 820T>G, 821C>T, 826T>G, 827T>C, 828A>T, 830A>G, 835G>T, 839A>T, 840G>T, 842A>G, 844_858delAAATTAATTGCTGCA, 861G>T, 866C>A, 867G>C, 868A>T, 869G>C, 870T>A, 871A>T, 872A>C, 880C>G, 881G>A, 883T>C, 884T>A, 885C>T, 889G>A, 890C>G, 892C>G, 893A>T, 894T>G, 895G>T, 896A>C, 897T>A, 898A>C, 900T>A, 902A>G, 903T>A, 905T>G, 907G>A, 908G>A, 909A>G, 910A>T, 911G>T, 915G>T, 917A>C, 918A>T, 920T>A, 922A>T, 923C>A, 924A>T, 926T>A, 932A>G, 934T>A, 936G>C, 938G>T, 940C>T, 941A>C, 942T>A, 943C>A, 944A>G, 945T>A, 947G>T, 948T>G, 948_949insGTG, 949C>A, 951G>A, 954T>G, 957C>T, 961G>A, 963G>T, 964G>T, 965C>T, 966A>T, 969T>C, 971A>G, 972T>C, 975C>T, 976C>G, 977C>A, 979G>T, 980G>C, 981C>A, 982A>T, 983A>G, 984T>C, 987T>A, 989C>T, 990C>A, 991G>A, 993T>C, 994A>G, 996C>A, 999G>T, 1000T>A, 1015A>C, 1017T>G, 1020A>C, 1023A>C, 1023_1024insAACCAT, 1026T>C, 1027T>A, 1028T>A, 1029T>A, 1030C>G, 1032T>G, 1033A>T, 1035T>G, 1036A>G, 1039_1041delATT, 1046G>T, 1047G>T, 1048C>A, 1050G>A, 1051A>C, 1054C>A, 1056T>G, 1057G>A, 1059T>A, 1062G>A, 1069T>A, 1070T>A, 1071A>T, 1072T>G, 1074G>A, 1080A>T, 1086T>C, 1088A>G, 1091A>C, 1092T>A, 1093T>C, 1094G>T, 1096T>G, 1097A>T, 1098T>G, 1102A>T, 1103G>C, 1104T>G, 1109T>G, 1110T>A, 1113C>T, 1126A>T, 1127G>C, 1128T>A, 1131T>C, 1132G>C, 1133T>A, 1134T>G, 1138A>T, 1139A>C, 1140C>A, 1141A>G, 1143A>G, 1147C>A, 1148C>A, 1149T>G, 1151T>A, 1152A>T, 1155T>A, 1156A>C, 1157A>C, 1159A>G, 1160G>A, 1161A>T, 1165A>T, 1169G>T, 1170G>A, 1172G>T, 1175T>G, 1176G>T, 1177T>A, 1178T>A, 1179T>A, 1182T>G, 1183A>G, 1185T>A, 1186C>A, 1188C>A, 1189A>T, 1190T>G, 1192G>A, 1194T>C, 1195C>G, 1198A>G, 1200A>T, 1201A>G, 1203T>C, 1207G>A, 1208A>T, 1209A>G, 1210G>T, 1212G>A, 1219C>T, 1221C>T, 1222A>C, 1224G>A, 1225T>G, 1226C>A, 1227G>A, 1234T>G, 1235C>A, 1236A>C, 1237G>A, 1239T>A, 1240G>A, 1242A>T, 1245T>A, 1249A>G, 1251T>G, 1252G>T, 1253T>A, 1254C>T, 1255A>G, 1257C>A, 1258A>T, 1260G>A, 1263G>A, 1264A>G, 1265T>A, 1266T>C, 1267C>T, 1268T>A, 1271G>A, 1273T>G, 1278T>C, 1279A>T, 1280T>G, 1281T>G, 1282A>G, 1283G>A, 1284T>A, 1285T>G, 1288T>A, 1289A>G, 1290T>G, 1291A>G, 1292A>G, 1293T>A, 1294G>C, 1295A>T, 1297A>G, 1299T>C, 1301A>T, 1304G>A, 1305C>A, 1307C>A, 1308T>C, 1309T>A, 1312A>G, 1315_1317delGTA, 1319A>G, 1320T>G, 1322G>A, 1323C>A, 1324A>G, 1331T>G, 1332G>A, 1333G>A, 1335A>T, 1336C>T, 1338T>G, 1342T>A, 1344A>G, 1350A>T, 1351T>A, 1352T>C, 1353C>A, 1355G>A, 1356T>G, 1358G>A, 1359T>G, 1363G>C, 1365T>G, 1367A>G, 1368A>T, 1369T>G, 1371A>G, 1374T>G, 1376G>T, 1377C>A, 1378A>T, 1379G>T, 1381A>G, 1383A>C, 1388A>T, 1390A>G, 1393G>A, 1394T>C, 1395T>A, 1396G>A, 1397A>G, 1398T>A, 1399G>T, 1401A>T, 1402T>A, 1405G>A, 1406A>G, 1407T>A, 1408A>G, 1411T>A, 1412T>C, 1413G>A, 1420T>A, 1422A>G, 1424T>C, 1425A>G, 1426A>T, 1427A>C, 1429T>A, 1434G>A, 1435G>A, 1437G>C, 1438G>C, 1443G>T, 1444A>C, 1445T>G, 1446T>A, 1447G>A, 1448A>C, 1450A>C, 1455G>C, 1458T>A, 1459T>A, 1460C>G, 1461T>G, 1462G>A, 1463G>A, 1464A>T, 1465A>G, 1466C>A, 1467T>A, 1468T>C, 1470A>C, 1472C>T, 1473T>A, 1476A>T, 1479A>G, 1481T>A, 1482T>C, 1485G>C, 1486C>T, 1489C>G, 1490T>A, 1491G>A, 1492A>C, 1494C>T, 1497C>A, 1498_1509delAACTCAGAAGAT, 1512C>T, 1513A>G, 1514A>T, 1520G>A, 1523_1527delATTAC, 1530A>T, 1531T>G, 1537T>A, 1539T>C, 1540_1554delCTAATTATACAGTAT, 1556T>A, 1557A>C, 1562T>G, 1575C>T, 1576A>G, 1577G>C, 1595C>G, 1596T>C, 1597G>A, 1601A>T, 1604T>A, 1606delC, 1612A>C
CDS
1497100%150443.3%484 (95.8%)191 (37.8%)8/13/0/01
Protein mutations:F9Y (56T>A), R12K (64C>A 65G>A 66T>A), R13K (68G>A 69A>G), T15N (74C>A), A16K (76G>A 77C>A 78T>G), R19S (85C>A 87G>T), R20L (88A>T 89G>T), L21V (91T>G 93A>G), C22L (94T>C 95G>T), N23K (99C>A), I24L (100A>C 102T>A), S28D (112T>G 113C>A), I29E (115A>G 116T>A 117T>A), C30W (120C>G), M31R (122T>G), V33A (128T>C 129T>A), D35V (134A>T 135T>G), A36T (136G>A 138G>A), I38Y (142A>T 143T>A), E44D (162A>T), I48Y (172A>T 173T>A 174A>T), A49T (175G>A 177T>A), D50N (178G>A), H53Y (187C>T), Y55R (193T>A 194A>G 195T>A), S58A (202T>G 204A>T), P60Y (208C>T 209C>A 210G>C), K64Q (220A>C 222A>G), V67S (229G>A 230T>G), N69Y (235A>T 237C>T), R70N (239G>A 240A>C), N76E (256A>G 258T>A), K82R (275A>G 276G>A), L83M (277C>A 279T>G), V86F (286G>T 288G>T), H88D (292C>G), P89V (295C>G 296C>T), I90V (298A>G 300T>A), D93E (309C>A), K94D (310A>G 312A>T), L95I (313T>A), Q96E (316C>G 318G>A), C97G (319T>G 321T>G), I98L (322A>C 324C>G), I99L (325A>C), D100T (328G>A 329A>C), L101M (331T>A), N103E (337A>G 339T>A), I104T (341T>C 342A>G), I105L (343A>T 345A>G), D110E (360T>A), V112L (364G>T 366A>G), I113V (367A>G 369T>G), R114N (371G>A 372A>T), E117I (379G>A 380A>T), R118N (383G>A 384A>C), M119S (385A>T 386T>C 387G>T), I120V (388A>G 390A>G), Q128E (412C>G), K130L (418A>T 419A>T 420A>G), I131L (421A>T 423T>A), L139M (445C>A 447C>G), N144Q (460A>C 462T>A), A146L (466G>T 467C>T 468T>G), A147T (469G>A 471A>T), F148I (472T>A 474T>A), K149N (477G>T), F150L (478T>C), D151del (481_483delGAT), N153D (487A>G), L155V (493C>G 495T>A), V158I (502G>A 504T>A), L161Y (512T>A 513A>C), E163D (519G>T), K164C (520A>T 521A>G 522A>C), S165M (523T>A 524C>T 525A>G), V166E (527T>A 528C>G), S167H (529A>C 530G>A), D168E (534T>A), I169N (536T>A 537A>C), Y170Q (538T>C 540T>A), A171T (541G>A 543T>A), Y173F (548A>T 549T>C), R174Q (550A>C 551G>A), I175F (553A>T), V176I (556G>A), F178L (562T>C 564T>A), I179L (565A>C), N180E (568A>G 570T>A), E181K (571G>A), F182Y (575T>A), I190R (599T>G 600T>A), T193H (607A>C 608C>A 609A>T), N197H (619A>C 621T>C), I200V (628A>G), E201I (631G>A 632A>T 633G>A), R203Q (637A>C 638G>A), N204Q (640A>C 642C>A), H205E (643C>G 645T>G), K208L (652A>T 653A>T), K209R (656A>G), Q212S (664C>T 665A>C), L213K (667T>A 668T>A), L216F (676C>T 678G>T), P217L (679C>T 680C>T), S219K (685T>A 686C>A), K220G (688A>G 689A>G 690A>G), L221K (691C>A 692T>A 693A>G), Q223R (697C>A 698A>G), I224L (700A>T 702T>G), Y225S (703T>A 704A>G), F226R (706T>A 707T>G 708T>G), T230S (718A>T 720T>A), K231del (721_723delAAA), E232D (726A>T), T233S (728C>G), V234L (730G>C 732G>T), I235M (735T>G), F236E (736T>G 737T>A 738T>A), N237D (739A>G), T238R (743C>G 744T>A), Y239H (745T>C), T240S (749C>G 750A>T), K241P (751A>C 752A>C), P243S (757C>T), G244L (760G>T 761G>T), R245M (764G>T 765A>G), S246Q (766T>C 767C>A), I247V (769A>G 771A>G), Y248V (772T>G 773A>T 774C>A), N250_V251insCISIH (780_781insTGCATCAGTATACAC), V251I (781G>A), T252N (785C>A), E253D (789A>T), F254C (791T>G), N255E (793A>G 795T>A), R257N (800G>A 801A>T), D258K (802G>A 804T>A), E259A (806A>C 807A>G), L260C (809T>G 810G>T), E261T (811G>A 812A>C), Y263I (817T>A 818A>T 819T>A), S264V (820T>G 821C>T), L266A (826T>G 827T>C 828A>T), K267R (830A>G), D269Y (835G>T), K270I (839A>T 840G>T), N271S (842A>G), K272_A276del (844_858delAAATTAATTGCTGCA), M277I (861G>T), T279N (866C>A 867G>C), K281S (871A>T 872A>C), R284E (880C>G 881G>A), F285H (883T>C 884T>A 885C>T), A287S (889G>A 890C>G), H288V (892C>G 893A>T 894T>G), D289S (895G>T 896A>C 897T>A), N290Q (898A>C 900T>A), N291R (902A>G 903T>A), F292C (905T>G), G293K (907G>A 908G>A 909A>G), R294L (910A>T 911G>T), L295F (915G>T), K296T (917A>C 918A>T), M297K (920T>A), T298Y (922A>T 923C>A 924A>T), I299K (926T>A), E301G (932A>G), L302I (934T>A 936G>C), G303V (938G>T), H304S (940C>T 941A>C 942T>A), H305R (943C>A 944A>G 945T>A), C306L (947G>T 948T>G), C306_Q307insV (948_949insGTG), Q307K (949C>A 951G>A), V311I (961G>A 963G>T), A312F (964G>T 965C>T 966A>T), N314S (971A>G 972T>C), P316E (976C>G 977C>A), G317S (979G>T 980G>C 981C>A), N318C (982A>T 983A>G 984T>C), S320L (989C>T 990C>A), D321N (991G>A 993T>C), I322V (994A>G 996C>A), Q323H (999G>T), Y324N (1000T>A), N329Q (1015A>C 1017T>G), K331N (1023A>C), K331_Y332insNH (1023_1024insAACCAT), F333K (1027T>A 1028T>A 1029T>A), L334V (1030C>G 1032T>G), S335W (1033A>T 1035T>G), K336E (1036A>G), I337del (1039_1041delATT), W339F (1046G>T 1047G>T), I341L (1051A>C), D343K (1057G>A 1059T>A), M344I (1062G>A), L347N (1069T>A 1070T>A 1071A>T), L348V (1072T>G 1074G>A), E350D (1080A>T), K353R (1088A>G), D354A (1091A>C 1092T>A), C355L (1093T>C 1094G>T), Y356V (1096T>G 1097A>T 1098T>G), V360G (1109T>G 1110T>A), V368Q (1132G>C 1133T>A 1134T>G), N370S (1138A>T 1139A>C 1140C>A), I371V (1141A>G 1143A>G), P373K (1147C>A 1148C>A 1149T>G), L374Y (1151T>A 1152A>T), K376P (1156A>C 1157A>C), R377D (1159A>G 1160G>A 1161A>T), I379F (1165A>T), W380L (1169G>T 1170G>A), S381I (1172G>T), L382C (1175T>G 1176G>T), F383K (1177T>A 1178T>A 1179T>A), N385E (1183A>G 1185T>A), H386K (1186C>A 1188C>A), M387W (1189A>T 1190T>G), D388N (1192G>A 1194T>C), Q389E (1195C>G), T390A (1198A>G 1200A>T), I391V (1201A>G 1203T>C), E393M (1207G>A 1208A>T 1209A>G), V394L (1210G>T 1212G>A), H397Y (1219C>T 1221C>T), M398L (1222A>C 1224G>A), S399E (1225T>G 1226C>A 1227G>A), S402D (1234T>G 1235C>A 1236A>C), V403I (1237G>A 1239T>A), E404N (1240G>A 1242A>T), N407E (1249A>G 1251T>G), V408Y (1252G>T 1253T>A 1254C>T), I409V (1255A>G 1257C>A), M410L (1258A>T 1260G>A), I412D (1264A>G 1265T>A 1266T>C), L413Y (1267C>T 1268T>A), G414E (1271G>A), L415V (1273T>G), I417W (1279A>T 1280T>G 1281T>G), S418E (1282A>G 1283G>A 1284T>A), L419V (1285T>G), Y420R (1288T>A 1289A>G 1290T>G), N421G (1291A>G 1292A>G 1293T>A), E422L (1294G>C 1295A>T), I423V (1297A>G 1299T>C), K424M (1301A>T), R425Q (1304G>A 1305C>A), T426N (1307C>A 1308T>C), L427M (1309T>A), N428D (1312A>G), V429del (1315_1317delGTA), D430G (1319A>G 1320T>G), S431K (1322G>A 1323C>A), I432V (1324A>G), M434R (1331T>G 1332G>A), V435I (1333G>A 1335A>T), L438M (1342T>A 1344A>G), E440D (1350A>T), F441T (1351T>A 1352T>C 1353C>A), S442K (1355G>A 1356T>G), S443K (1358G>A 1359T>G), V445L (1363G>C 1365T>G), K446S (1367A>G 1368A>T), S447A (1369T>G 1371A>G), I448M (1374T>G), S449I (1376G>T 1377C>A), S450F (1378A>T 1379G>T), K451D (1381A>G 1383A>C), Y453F (1388A>T), N454D (1390A>G), V455T (1393G>A 1394T>C 1395T>A), D456R (1396G>A 1397A>G 1398T>A), E457Y (1399G>T 1401A>T), L458M (1402T>A), D459R (1405G>A 1406A>G 1407T>A), K460E (1408A>G), L461T (1411T>A 1412T>C 1413G>A), S464T (1420T>A 1422A>G), I465T (1424T>C 1425A>G), K466S (1426A>T 1427A>C), S467T (1429T>A), E469N (1435G>A 1437G>C), E470Q (1438G>C), I472R (1444A>C 1445T>G 1446T>A), E473T (1447G>A 1448A>C), M474L (1450A>C), K475N (1455G>C), N476K (1458T>A), S477R (1459T>A 1460C>G 1461T>G), G478N (1462G>A 1463G>A 1464A>T), T479E (1465A>G 1466C>A 1467T>A), T481I (1472C>T 1473T>A), E482D (1476A>T), F484Y (1481T>A 1482T>C), E485D (1485G>C), L487E (1489C>G 1490T>A 1491G>A), I488L (1492A>C 1494C>T), N490_D493del (1498_1509delAACTCAGAAGAT), N495V (1513A>G 1514A>T)
Codon mutations:GCT2GCG (36T>G), GAT6GAC (48T>C), GCA7GCT (51A>T), TGC8TGT (54C>T), TTT9TAT (56T>A), CGT12AAA (64C>A 65G>A 66T>A), AGA13AAG (68G>A 69A>G), TTA14TTG (72A>G), ACT15AAT (74C>A), GCT16AAG (76G>A 77C>A 78T>G), CGG19AGT (85C>A 87G>T), AGA20TTA (88A>T 89G>T), TTA21GTG (91T>G 93A>G), TGC22CTC (94T>C 95G>T), AAC23AAA (99C>A), ATT24CTA (100A>C 102T>A), GGT25GGA (105T>A), TCT28GAT (112T>G 113C>A), ATT29GAA (115A>G 116T>A 117T>A), TGC30TGG (120C>G), ATG31AGG (122T>G), GTT33GCA (128T>C 129T>A), CCT34CCA (132T>A), GAT35GTG (134A>T 135T>G), GCG36ACA (136G>A 138G>A), ATT38TAT (142A>T 143T>A), AAG39AAA (147G>A), GGG40GGA (150G>A), GAA44GAT (162A>T), ATA48TAT (172A>T 173T>A 174A>T), GCT49ACA (175G>A 177T>A), GAT50AAT (178G>A), TTA51TTG (183A>G), ACC52ACA (186C>A), CAT53TAT (187C>T), TGT54TGC (192T>C), TAT55AGA (193T>A 194A>G 195T>A), GGT56GGG (198T>G), TCA58GCT (202T>G 204A>T), TTG59CTA (205T>C 207G>A), CCG60TAC (208C>T 209C>A 210G>C), GTT62GTA (216T>A), TGC63TGT (219C>T), AAA64CAG (220A>C 222A>G), TGT66TGC (228T>C), GTT67AGT (229G>A 230T>G), AAC69TAT (235A>T 237C>T), AGA70AAC (239G>A 240A>C), AGA71AGG (243A>G), TGC72TGT (246C>T), CTT74TTA (250C>T 252T>A), GAC75GAT (255C>T), AAT76GAA (256A>G 258T>A), CCT78CCC (264T>C), CTT81CTG (273T>G), AAG82AGA (275A>G 276G>A), CTT83ATG (277C>A 279T>G), AGA84CGA (280A>C), ACT85ACA (285T>A), GTG86TTT (286G>T 288G>T), CAT88GAT (292C>G), CCA89GTA (295C>G 296C>T), ATT90GTA (298A>G 300T>A), ACC91ACA (303C>A), AAA92AAG (306A>G), GAC93GAA (309C>A), AAA94GAT (310A>G 312A>T), TTA95ATA (313T>A), CAG96GAA (316C>G 318G>A), TGT97GGG (319T>G 321T>G), ATC98CTG (322A>C 324C>G), ATA99CTA (325A>C), GAC100ACC (328G>A 329A>C), TTG101ATG (331T>A), TAC102TAT (336C>T), AAT103GAA (337A>G 339T>A), ATA104ACG (341T>C 342A>G), ATA105TTG (343A>T 345A>G), ATT108ATA (354T>A), GAT110GAA (360T>A), AAA111AAG (363A>G), GTA112TTG (364G>T 366A>G), ATT113GTG (367A>G 369T>G), AGA114AAT (371G>A 372A>T), TTT116TTC (378T>C), GAA117ATA (379G>A 380A>T), AGA118AAC (383G>A 384A>C), ATG119TCT (385A>T 386T>C 387G>T), ATA120GTG (388A>G 390A>G), AAG121AAA (393G>A), CAA122CAG (396A>G), AGA123CGT (397A>C 399A>T), AAA124AAG (402A>G), CAA128GAA (412C>G), AAA130TTG (418A>T 419A>T 420A>G), ATT131TTA (421A>T 423T>A), CAT136CAC (438T>C), TTG137TTA (441G>A), CTG138CTA (444G>A), CTC139ATG (445C>A 447C>G), ATT141ATA (453T>A), AAT144CAA (460A>C 462T>A), GCT145GCA (465T>A), GCT146TTG (466G>T 467C>T 468T>G), GCA147ACT (469G>A 471A>T), TTT148ATA (472T>A 474T>A), AAG149AAT (477G>T), TTT150CTT (478T>C), GAT151del (481_483delGAT), GAA152GAG (486A>G), AAT153GAT (487A>G), CTT155GTA (493C>G 495T>A), GTT158ATA (502G>A 504T>A), GGG160GGA (510G>A), TTA161TAC (512T>A 513A>C), GAG163GAT (519G>T), AAA164TGC (520A>T 521A>G 522A>C), TCA165ATG (523T>A 524C>T 525A>G), GTC166GAG (527T>A 528C>G), AGT167CAT (529A>C 530G>A), GAT168GAA (534T>A), ATA169AAC (536T>A 537A>C), TAT170CAA (538T>C 540T>A), GCT171ACA (541G>A 543T>A), TAT173TTC (548A>T 549T>C), AGA174CAA (550A>C 551G>A), ATT175TTT (553A>T), GTT176ATT (556G>A), AAC177AAT (561C>T), TTT178CTA (562T>C 564T>A), ATA179CTA (565A>C), AAT180GAA (568A>G 570T>A), GAA181AAA (571G>A), TTT182TAT (575T>A), TTA185TTG (585A>G), TTG186CTA (586T>C 588G>A), CTT187CTA (591T>A), ATT190AGA (599T>G 600T>A), AAC191AAT (603C>T), TTT192TTC (606T>C), ACA193CAT (607A>C 608C>A 609A>T), TCC196TCA (618C>A), AAT197CAC (619A>C 621T>C), CTA198TTA (622C>T), ATA200GTA (628A>G), GAG201ATA (631G>A 632A>T 633G>A), AGA203CAA (637A>C 638G>A), AAC204CAA (640A>C 642C>A), CAT205GAG (643C>G 645T>G), GCA207GCT (651A>T), AAG208TTG (652A>T 653A>T), AAA209AGA (656A>G), TAC210TAT (660C>T), TTC211TTT (663C>T), CAA212TCA (664C>T 665A>C), TTA213AAA (667T>A 668T>A), CTG216TTT (676C>T 678G>T), CCA217TTA (679C>T 680C>T), TCA218AGT (682T>A 683C>G 684A>T), TCA219AAA (685T>A 686C>A), AAA220GGG (688A>G 689A>G 690A>G), CTA221AAG (691C>A 692T>A 693A>G), CAA223AGA (697C>A 698A>G), ATT224TTG (700A>T 702T>G), TAC225AGC (703T>A 704A>G), TTT226AGG (706T>A 707T>G 708T>G), TCA227AGT (709T>A 710C>G 711A>T), TTT229TTC (717T>C), ACT230TCA (718A>T 720T>A), AAA231del (721_723delAAA), GAA232GAT (726A>T), ACT233AGT (728C>G), GTG234CTT (730G>C 732G>T), ATT235ATG (735T>G), TTT236GAA (736T>G 737T>A 738T>A), AAT237GAT (739A>G), ACT238AGA (743C>G 744T>A), TAT239CAT (745T>C), ACA240AGT (749C>G 750A>T), AAA241CCA (751A>C 752A>C), ACG242ACA (756G>A), CCA243TCA (757C>T), GGA244TTA (760G>T 761G>T), AGA245ATG (764G>T 765A>G), TCA246CAA (766T>C 767C>A), ATA247GTG (769A>G 771A>G), TAC248GTA (772T>G 773A>T 774C>A), AGA249CGT (775A>C 777A>T), AAT250AAC (780T>C), AAT250_GTA251insTGCATCAGTATACAC (780_781insTGCATCAGTATACAC), GTA251ATA (781G>A), ACT252AAT (785C>A), GAA253GAT (789A>T), TTT254TGT (791T>G), AAT255GAA (793A>G 795T>A), AGA257AAT (800G>A 801A>T), GAT258AAA (802G>A 804T>A), GAA259GCG (806A>C 807A>G), TTG260TGT (809T>G 810G>T), GAG261ACG (811G>A 812A>C), TAT263ATA (817T>A 818A>T 819T>A), TCT264GTT (820T>G 821C>T), TTA266GCT (826T>G 827T>C 828A>T), AAA267AGA (830A>G), GAT269TAT (835G>T), AAG270ATT (839A>T 840G>T), AAT271AGT (842A>G), AAA272_GCA276del (844_858delAAATTAATTGCTGCA), ATG277ATT (861G>T), ACG279AAC (866C>A 867G>C), AGT280TCA (868A>T 869G>C 870T>A), AAG281TCG (871A>T 872A>C), CGG284GAG (880C>G 881G>A), TTC285CAT (883T>C 884T>A 885C>T), GCT287AGT (889G>A 890C>G), CAT288GTG (892C>G 893A>T 894T>G), GAT289TCA (895G>T 896A>C 897T>A), AAT290CAA (898A>C 900T>A), AAT291AGA (902A>G 903T>A), TTT292TGT (905T>G), GGA293AAG (907G>A 908G>A 909A>G), AGG294TTG (910A>T 911G>T), TTG295TTT (915G>T), AAA296ACT (917A>C 918A>T), ATG297AAG (920T>A), ACA298TAT (922A>T 923C>A 924A>T), ATA299AAA (926T>A), GAG301GGG (932A>G), TTG302ATC (934T>A 936G>C), GGA303GTA (938G>T), CAT304TCA (940C>T 941A>C 942T>A), CAT305AGA (943C>A 944A>G 945T>A), TGT306TTG (947G>T 948T>G), TGT306_CAG307insGTG (948_949insGTG), CAG307AAA (949C>A 951G>A), CCT308CCG (954T>G), AAC309AAT (957C>T), GTG311ATT (961G>A 963G>T), GCA312TTT (964G>T 965C>T 966A>T), TCT313TCC (969T>C), AAT314AGC (971A>G 972T>C), CAC315CAT (975C>T), CCA316GAA (976C>G 977C>A), GGC317TCA (979G>T 980G>C 981C>A), AAT318TGC (982A>T 983A>G 984T>C), GCT319GCA (987T>A), TCC320TTA (989C>T 990C>A), GAT321AAC (991G>A 993T>C), ATC322GTA (994A>G 996C>A), CAG323CAT (999G>T), TAC324AAC (1000T>A), AAT329CAG (1015A>C 1017T>G), ATA330ATC (1020A>C), AAA331AAC (1023A>C), AAA331_TAT332insAACCAT (1023_1024insAACCAT), TAT332TAC (1026T>C), TTT333AAA (1027T>A 1028T>A 1029T>A), CTT334GTG (1030C>G 1032T>G), AGT335TGG (1033A>T 1035T>G), AAA336GAA (1036A>G), ATT337del (1039_1041delATT), TGG339TTT (1046G>T 1047G>T), CGG340AGA (1048C>A 1050G>A), ATT341CTT (1051A>C), CGT342AGG (1054C>A 1056T>G), GAT343AAA (1057G>A 1059T>A), ATG344ATA (1062G>A), TTA347AAT (1069T>A 1070T>A 1071A>T), TTG348GTA (1072T>G 1074G>A), GAA350GAT (1080A>T), ATT352ATC (1086T>C), AAG353AGG (1088A>G), GAT354GCA (1091A>C 1092T>A), TGT355CTT (1093T>C 1094G>T), TAT356GTG (1096T>G 1097A>T 1098T>G), AGT358TCG (1102A>T 1103G>C 1104T>G), GTT360GGA (1109T>G 1110T>A), AAC361AAT (1113C>T), AGT366TCA (1126A>T 1127G>C 1128T>A), TCT367TCC (1131T>C), GTT368CAG (1132G>C 1133T>A 1134T>G), AAC370TCA (1138A>T 1139A>C 1140C>A), ATA371GTG (1141A>G 1143A>G), CCT373AAG (1147C>A 1148C>A 1149T>G), TTA374TAT (1151T>A 1152A>T), ATT375ATA (1155T>A), AAA376CCA (1156A>C 1157A>C), AGA377GAT (1159A>G 1160G>A 1161A>T), ATT379TTT (1165A>T), TGG380TTA (1169G>T 1170G>A), AGT381ATT (1172G>T), TTG382TGT (1175T>G 1176G>T), TTT383AAA (1177T>A 1178T>A 1179T>A), ACT384ACG (1182T>G), AAT385GAA (1183A>G 1185T>A), CAC386AAA (1186C>A 1188C>A), ATG387TGG (1189A>T 1190T>G), GAT388AAC (1192G>A 1194T>C), CAA389GAA (1195C>G), ACA390GCT (1198A>G 1200A>T), ATT391GTC (1201A>G 1203T>C), GAA393ATG (1207G>A 1208A>T 1209A>G), GTG394TTA (1210G>T 1212G>A), CAC397TAT (1219C>T 1221C>T), ATG398CTA (1222A>C 1224G>A), TCG399GAA (1225T>G 1226C>A 1227G>A), TCA402GAC (1234T>G 1235C>A 1236A>C), GTT403ATA (1237G>A 1239T>A), GAA404AAT (1240G>A 1242A>T), GGT405GGA (1245T>A), AAT407GAG (1249A>G 1251T>G), GTC408TAT (1252G>T 1253T>A 1254C>T), ATC409GTA (1255A>G 1257C>A), ATG410TTA (1258A>T 1260G>A), TTG411TTA (1263G>A), ATT412GAC (1264A>G 1265T>A 1266T>C), CTT413TAT (1267C>T 1268T>A), GGA414GAA (1271G>A), TTG415GTG (1273T>G), AAT416AAC (1278T>C), ATT417TGG (1279A>T 1280T>G 1281T>G), AGT418GAA (1282A>G 1283G>A 1284T>A), TTG419GTG (1285T>G), TAT420AGG (1288T>A 1289A>G 1290T>G), AAT421GGA (1291A>G 1292A>G 1293T>A), GAA422CTA (1294G>C 1295A>T), ATT423GTC (1297A>G 1299T>C), AAG424ATG (1301A>T), CGC425CAA (1304G>A 1305C>A), ACT426AAC (1307C>A 1308T>C), TTG427ATG (1309T>A), AAT428GAT (1312A>G), GTA429del (1315_1317delGTA), GAT430GGG (1319A>G 1320T>G), AGC431AAA (1322G>A 1323C>A), ATA432GTA (1324A>G), ATG434AGA (1331T>G 1332G>A), GTA435ATT (1333G>A 1335A>T), CTT436TTG (1336C>T 1338T>G), TTA438ATG (1342T>A 1344A>G), GAA440GAT (1350A>T), TTC441ACA (1351T>A 1352T>C 1353C>A), AGT442AAG (1355G>A 1356T>G), AGT443AAG (1358G>A 1359T>G), GTT445CTG (1363G>C 1365T>G), AAA446AGT (1367A>G 1368A>T), TCA447GCG (1369T>G 1371A>G), ATT448ATG (1374T>G), AGC449ATA (1376G>T 1377C>A), AGT450TTT (1378A>T 1379G>T), AAA451GAC (1381A>G 1383A>C), TAT453TTT (1388A>T), AAT454GAT (1390A>G), GTT455ACA (1393G>A 1394T>C 1395T>A), GAT456AGA (1396G>A 1397A>G 1398T>A), GAA457TAT (1399G>T 1401A>T), TTG458ATG (1402T>A), GAT459AGA (1405G>A 1406A>G 1407T>A), AAA460GAA (1408A>G), TTG461ACA (1411T>A 1412T>C 1413G>A), TCA464ACG (1420T>A 1422A>G), ATA465ACG (1424T>C 1425A>G), AAA466TCA (1426A>T 1427A>C), TCA467ACA (1429T>A), ACG468ACA (1434G>A), GAG469AAC (1435G>A 1437G>C), GAA470CAA (1438G>C), CTG471CTT (1443G>T), ATT472CGA (1444A>C 1445T>G 1446T>A), GAA473ACA (1447G>A 1448A>C), ATG474CTG (1450A>C), AAG475AAC (1455G>C), AAT476AAA (1458T>A), TCT477AGG (1459T>A 1460C>G 1461T>G), GGA478AAT (1462G>A 1463G>A 1464A>T), ACT479GAA (1465A>G 1466C>A 1467T>A), TTA480CTC (1468T>C 1470A>C), ACT481ATA (1472C>T 1473T>A), GAA482GAT (1476A>T), GAA483GAG (1479A>G), TTT484TAC (1481T>A 1482T>C), GAG485GAC (1485G>C), CTA486TTA (1486C>T), CTG487GAA (1489C>G 1490T>A 1491G>A), ATC488CTT (1492A>C 1494C>T), TCC489TCA (1497C>A), AAC490_GAT493del (1498_1509delAACTCAGAAGAT), GAC494GAT (1512C>T), AAT495GTT (1513A>G 1514A>T), TGA497TAA (1520G>A)
Proteins
1497100%150443.3%484 (95.8%)191 (37.8%)8/13/0/01
Protein mutations:F9Y (56T>A), R12K (64C>A 65G>A 66T>A), R13K (68G>A 69A>G), T15N (74C>A), A16K (76G>A 77C>A 78T>G), R19S (85C>A 87G>T), R20L (88A>T 89G>T), L21V (91T>G 93A>G), C22L (94T>C 95G>T), N23K (99C>A), I24L (100A>C 102T>A), S28D (112T>G 113C>A), I29E (115A>G 116T>A 117T>A), C30W (120C>G), M31R (122T>G), V33A (128T>C 129T>A), D35V (134A>T 135T>G), A36T (136G>A 138G>A), I38Y (142A>T 143T>A), E44D (162A>T), I48Y (172A>T 173T>A 174A>T), A49T (175G>A 177T>A), D50N (178G>A), H53Y (187C>T), Y55R (193T>A 194A>G 195T>A), S58A (202T>G 204A>T), P60Y (208C>T 209C>A 210G>C), K64Q (220A>C 222A>G), V67S (229G>A 230T>G), N69Y (235A>T 237C>T), R70N (239G>A 240A>C), N76E (256A>G 258T>A), K82R (275A>G 276G>A), L83M (277C>A 279T>G), V86F (286G>T 288G>T), H88D (292C>G), P89V (295C>G 296C>T), I90V (298A>G 300T>A), D93E (309C>A), K94D (310A>G 312A>T), L95I (313T>A), Q96E (316C>G 318G>A), C97G (319T>G 321T>G), I98L (322A>C 324C>G), I99L (325A>C), D100T (328G>A 329A>C), L101M (331T>A), N103E (337A>G 339T>A), I104T (341T>C 342A>G), I105L (343A>T 345A>G), D110E (360T>A), V112L (364G>T 366A>G), I113V (367A>G 369T>G), R114N (371G>A 372A>T), E117I (379G>A 380A>T), R118N (383G>A 384A>C), M119S (385A>T 386T>C 387G>T), I120V (388A>G 390A>G), Q128E (412C>G), K130L (418A>T 419A>T 420A>G), I131L (421A>T 423T>A), L139M (445C>A 447C>G), N144Q (460A>C 462T>A), A146L (466G>T 467C>T 468T>G), A147T (469G>A 471A>T), F148I (472T>A 474T>A), K149N (477G>T), F150L (478T>C), D151del (481_483delGAT), N153D (487A>G), L155V (493C>G 495T>A), V158I (502G>A 504T>A), L161Y (512T>A 513A>C), E163D (519G>T), K164C (520A>T 521A>G 522A>C), S165M (523T>A 524C>T 525A>G), V166E (527T>A 528C>G), S167H (529A>C 530G>A), D168E (534T>A), I169N (536T>A 537A>C), Y170Q (538T>C 540T>A), A171T (541G>A 543T>A), Y173F (548A>T 549T>C), R174Q (550A>C 551G>A), I175F (553A>T), V176I (556G>A), F178L (562T>C 564T>A), I179L (565A>C), N180E (568A>G 570T>A), E181K (571G>A), F182Y (575T>A), I190R (599T>G 600T>A), T193H (607A>C 608C>A 609A>T), N197H (619A>C 621T>C), I200V (628A>G), E201I (631G>A 632A>T 633G>A), R203Q (637A>C 638G>A), N204Q (640A>C 642C>A), H205E (643C>G 645T>G), K208L (652A>T 653A>T), K209R (656A>G), Q212S (664C>T 665A>C), L213K (667T>A 668T>A), L216F (676C>T 678G>T), P217L (679C>T 680C>T), S219K (685T>A 686C>A), K220G (688A>G 689A>G 690A>G), L221K (691C>A 692T>A 693A>G), Q223R (697C>A 698A>G), I224L (700A>T 702T>G), Y225S (703T>A 704A>G), F226R (706T>A 707T>G 708T>G), T230S (718A>T 720T>A), K231del (721_723delAAA), E232D (726A>T), T233S (728C>G), V234L (730G>C 732G>T), I235M (735T>G), F236E (736T>G 737T>A 738T>A), N237D (739A>G), T238R (743C>G 744T>A), Y239H (745T>C), T240S (749C>G 750A>T), K241P (751A>C 752A>C), P243S (757C>T), G244L (760G>T 761G>T), R245M (764G>T 765A>G), S246Q (766T>C 767C>A), I247V (769A>G 771A>G), Y248V (772T>G 773A>T 774C>A), N250_V251insCISIH (780_781insTGCATCAGTATACAC), V251I (781G>A), T252N (785C>A), E253D (789A>T), F254C (791T>G), N255E (793A>G 795T>A), R257N (800G>A 801A>T), D258K (802G>A 804T>A), E259A (806A>C 807A>G), L260C (809T>G 810G>T), E261T (811G>A 812A>C), Y263I (817T>A 818A>T 819T>A), S264V (820T>G 821C>T), L266A (826T>G 827T>C 828A>T), K267R (830A>G), D269Y (835G>T), K270I (839A>T 840G>T), N271S (842A>G), K272_A276del (844_858delAAATTAATTGCTGCA), M277I (861G>T), T279N (866C>A 867G>C), K281S (871A>T 872A>C), R284E (880C>G 881G>A), F285H (883T>C 884T>A 885C>T), A287S (889G>A 890C>G), H288V (892C>G 893A>T 894T>G), D289S (895G>T 896A>C 897T>A), N290Q (898A>C 900T>A), N291R (902A>G 903T>A), F292C (905T>G), G293K (907G>A 908G>A 909A>G), R294L (910A>T 911G>T), L295F (915G>T), K296T (917A>C 918A>T), M297K (920T>A), T298Y (922A>T 923C>A 924A>T), I299K (926T>A), E301G (932A>G), L302I (934T>A 936G>C), G303V (938G>T), H304S (940C>T 941A>C 942T>A), H305R (943C>A 944A>G 945T>A), C306L (947G>T 948T>G), C306_Q307insV (948_949insGTG), Q307K (949C>A 951G>A), V311I (961G>A 963G>T), A312F (964G>T 965C>T 966A>T), N314S (971A>G 972T>C), P316E (976C>G 977C>A), G317S (979G>T 980G>C 981C>A), N318C (982A>T 983A>G 984T>C), S320L (989C>T 990C>A), D321N (991G>A 993T>C), I322V (994A>G 996C>A), Q323H (999G>T), Y324N (1000T>A), N329Q (1015A>C 1017T>G), K331N (1023A>C), K331_Y332insNH (1023_1024insAACCAT), F333K (1027T>A 1028T>A 1029T>A), L334V (1030C>G 1032T>G), S335W (1033A>T 1035T>G), K336E (1036A>G), I337del (1039_1041delATT), W339F (1046G>T 1047G>T), I341L (1051A>C), D343K (1057G>A 1059T>A), M344I (1062G>A), L347N (1069T>A 1070T>A 1071A>T), L348V (1072T>G 1074G>A), E350D (1080A>T), K353R (1088A>G), D354A (1091A>C 1092T>A), C355L (1093T>C 1094G>T), Y356V (1096T>G 1097A>T 1098T>G), V360G (1109T>G 1110T>A), V368Q (1132G>C 1133T>A 1134T>G), N370S (1138A>T 1139A>C 1140C>A), I371V (1141A>G 1143A>G), P373K (1147C>A 1148C>A 1149T>G), L374Y (1151T>A 1152A>T), K376P (1156A>C 1157A>C), R377D (1159A>G 1160G>A 1161A>T), I379F (1165A>T), W380L (1169G>T 1170G>A), S381I (1172G>T), L382C (1175T>G 1176G>T), F383K (1177T>A 1178T>A 1179T>A), N385E (1183A>G 1185T>A), H386K (1186C>A 1188C>A), M387W (1189A>T 1190T>G), D388N (1192G>A 1194T>C), Q389E (1195C>G), T390A (1198A>G 1200A>T), I391V (1201A>G 1203T>C), E393M (1207G>A 1208A>T 1209A>G), V394L (1210G>T 1212G>A), H397Y (1219C>T 1221C>T), M398L (1222A>C 1224G>A), S399E (1225T>G 1226C>A 1227G>A), S402D (1234T>G 1235C>A 1236A>C), V403I (1237G>A 1239T>A), E404N (1240G>A 1242A>T), N407E (1249A>G 1251T>G), V408Y (1252G>T 1253T>A 1254C>T), I409V (1255A>G 1257C>A), M410L (1258A>T 1260G>A), I412D (1264A>G 1265T>A 1266T>C), L413Y (1267C>T 1268T>A), G414E (1271G>A), L415V (1273T>G), I417W (1279A>T 1280T>G 1281T>G), S418E (1282A>G 1283G>A 1284T>A), L419V (1285T>G), Y420R (1288T>A 1289A>G 1290T>G), N421G (1291A>G 1292A>G 1293T>A), E422L (1294G>C 1295A>T), I423V (1297A>G 1299T>C), K424M (1301A>T), R425Q (1304G>A 1305C>A), T426N (1307C>A 1308T>C), L427M (1309T>A), N428D (1312A>G), V429del (1315_1317delGTA), D430G (1319A>G 1320T>G), S431K (1322G>A 1323C>A), I432V (1324A>G), M434R (1331T>G 1332G>A), V435I (1333G>A 1335A>T), L438M (1342T>A 1344A>G), E440D (1350A>T), F441T (1351T>A 1352T>C 1353C>A), S442K (1355G>A 1356T>G), S443K (1358G>A 1359T>G), V445L (1363G>C 1365T>G), K446S (1367A>G 1368A>T), S447A (1369T>G 1371A>G), I448M (1374T>G), S449I (1376G>T 1377C>A), S450F (1378A>T 1379G>T), K451D (1381A>G 1383A>C), Y453F (1388A>T), N454D (1390A>G), V455T (1393G>A 1394T>C 1395T>A), D456R (1396G>A 1397A>G 1398T>A), E457Y (1399G>T 1401A>T), L458M (1402T>A), D459R (1405G>A 1406A>G 1407T>A), K460E (1408A>G), L461T (1411T>A 1412T>C 1413G>A), S464T (1420T>A 1422A>G), I465T (1424T>C 1425A>G), K466S (1426A>T 1427A>C), S467T (1429T>A), E469N (1435G>A 1437G>C), E470Q (1438G>C), I472R (1444A>C 1445T>G 1446T>A), E473T (1447G>A 1448A>C), M474L (1450A>C), K475N (1455G>C), N476K (1458T>A), S477R (1459T>A 1460C>G 1461T>G), G478N (1462G>A 1463G>A 1464A>T), T479E (1465A>G 1466C>A 1467T>A), T481I (1472C>T 1473T>A), E482D (1476A>T), F484Y (1481T>A 1482T>C), E485D (1485G>C), L487E (1489C>G 1490T>A 1491G>A), I488L (1492A>C 1494C>T), N490_D493del (1498_1509delAACTCAGAAGAT), N495V (1513A>G 1514A>T)
Codon mutations:GCT2GCG (36T>G), GAT6GAC (48T>C), GCA7GCT (51A>T), TGC8TGT (54C>T), TTT9TAT (56T>A), CGT12AAA (64C>A 65G>A 66T>A), AGA13AAG (68G>A 69A>G), TTA14TTG (72A>G), ACT15AAT (74C>A), GCT16AAG (76G>A 77C>A 78T>G), CGG19AGT (85C>A 87G>T), AGA20TTA (88A>T 89G>T), TTA21GTG (91T>G 93A>G), TGC22CTC (94T>C 95G>T), AAC23AAA (99C>A), ATT24CTA (100A>C 102T>A), GGT25GGA (105T>A), TCT28GAT (112T>G 113C>A), ATT29GAA (115A>G 116T>A 117T>A), TGC30TGG (120C>G), ATG31AGG (122T>G), GTT33GCA (128T>C 129T>A), CCT34CCA (132T>A), GAT35GTG (134A>T 135T>G), GCG36ACA (136G>A 138G>A), ATT38TAT (142A>T 143T>A), AAG39AAA (147G>A), GGG40GGA (150G>A), GAA44GAT (162A>T), ATA48TAT (172A>T 173T>A 174A>T), GCT49ACA (175G>A 177T>A), GAT50AAT (178G>A), TTA51TTG (183A>G), ACC52ACA (186C>A), CAT53TAT (187C>T), TGT54TGC (192T>C), TAT55AGA (193T>A 194A>G 195T>A), GGT56GGG (198T>G), TCA58GCT (202T>G 204A>T), TTG59CTA (205T>C 207G>A), CCG60TAC (208C>T 209C>A 210G>C), GTT62GTA (216T>A), TGC63TGT (219C>T), AAA64CAG (220A>C 222A>G), TGT66TGC (228T>C), GTT67AGT (229G>A 230T>G), AAC69TAT (235A>T 237C>T), AGA70AAC (239G>A 240A>C), AGA71AGG (243A>G), TGC72TGT (246C>T), CTT74TTA (250C>T 252T>A), GAC75GAT (255C>T), AAT76GAA (256A>G 258T>A), CCT78CCC (264T>C), CTT81CTG (273T>G), AAG82AGA (275A>G 276G>A), CTT83ATG (277C>A 279T>G), AGA84CGA (280A>C), ACT85ACA (285T>A), GTG86TTT (286G>T 288G>T), CAT88GAT (292C>G), CCA89GTA (295C>G 296C>T), ATT90GTA (298A>G 300T>A), ACC91ACA (303C>A), AAA92AAG (306A>G), GAC93GAA (309C>A), AAA94GAT (310A>G 312A>T), TTA95ATA (313T>A), CAG96GAA (316C>G 318G>A), TGT97GGG (319T>G 321T>G), ATC98CTG (322A>C 324C>G), ATA99CTA (325A>C), GAC100ACC (328G>A 329A>C), TTG101ATG (331T>A), TAC102TAT (336C>T), AAT103GAA (337A>G 339T>A), ATA104ACG (341T>C 342A>G), ATA105TTG (343A>T 345A>G), ATT108ATA (354T>A), GAT110GAA (360T>A), AAA111AAG (363A>G), GTA112TTG (364G>T 366A>G), ATT113GTG (367A>G 369T>G), AGA114AAT (371G>A 372A>T), TTT116TTC (378T>C), GAA117ATA (379G>A 380A>T), AGA118AAC (383G>A 384A>C), ATG119TCT (385A>T 386T>C 387G>T), ATA120GTG (388A>G 390A>G), AAG121AAA (393G>A), CAA122CAG (396A>G), AGA123CGT (397A>C 399A>T), AAA124AAG (402A>G), CAA128GAA (412C>G), AAA130TTG (418A>T 419A>T 420A>G), ATT131TTA (421A>T 423T>A), CAT136CAC (438T>C), TTG137TTA (441G>A), CTG138CTA (444G>A), CTC139ATG (445C>A 447C>G), ATT141ATA (453T>A), AAT144CAA (460A>C 462T>A), GCT145GCA (465T>A), GCT146TTG (466G>T 467C>T 468T>G), GCA147ACT (469G>A 471A>T), TTT148ATA (472T>A 474T>A), AAG149AAT (477G>T), TTT150CTT (478T>C), GAT151del (481_483delGAT), GAA152GAG (486A>G), AAT153GAT (487A>G), CTT155GTA (493C>G 495T>A), GTT158ATA (502G>A 504T>A), GGG160GGA (510G>A), TTA161TAC (512T>A 513A>C), GAG163GAT (519G>T), AAA164TGC (520A>T 521A>G 522A>C), TCA165ATG (523T>A 524C>T 525A>G), GTC166GAG (527T>A 528C>G), AGT167CAT (529A>C 530G>A), GAT168GAA (534T>A), ATA169AAC (536T>A 537A>C), TAT170CAA (538T>C 540T>A), GCT171ACA (541G>A 543T>A), TAT173TTC (548A>T 549T>C), AGA174CAA (550A>C 551G>A), ATT175TTT (553A>T), GTT176ATT (556G>A), AAC177AAT (561C>T), TTT178CTA (562T>C 564T>A), ATA179CTA (565A>C), AAT180GAA (568A>G 570T>A), GAA181AAA (571G>A), TTT182TAT (575T>A), TTA185TTG (585A>G), TTG186CTA (586T>C 588G>A), CTT187CTA (591T>A), ATT190AGA (599T>G 600T>A), AAC191AAT (603C>T), TTT192TTC (606T>C), ACA193CAT (607A>C 608C>A 609A>T), TCC196TCA (618C>A), AAT197CAC (619A>C 621T>C), CTA198TTA (622C>T), ATA200GTA (628A>G), GAG201ATA (631G>A 632A>T 633G>A), AGA203CAA (637A>C 638G>A), AAC204CAA (640A>C 642C>A), CAT205GAG (643C>G 645T>G), GCA207GCT (651A>T), AAG208TTG (652A>T 653A>T), AAA209AGA (656A>G), TAC210TAT (660C>T), TTC211TTT (663C>T), CAA212TCA (664C>T 665A>C), TTA213AAA (667T>A 668T>A), CTG216TTT (676C>T 678G>T), CCA217TTA (679C>T 680C>T), TCA218AGT (682T>A 683C>G 684A>T), TCA219AAA (685T>A 686C>A), AAA220GGG (688A>G 689A>G 690A>G), CTA221AAG (691C>A 692T>A 693A>G), CAA223AGA (697C>A 698A>G), ATT224TTG (700A>T 702T>G), TAC225AGC (703T>A 704A>G), TTT226AGG (706T>A 707T>G 708T>G), TCA227AGT (709T>A 710C>G 711A>T), TTT229TTC (717T>C), ACT230TCA (718A>T 720T>A), AAA231del (721_723delAAA), GAA232GAT (726A>T), ACT233AGT (728C>G), GTG234CTT (730G>C 732G>T), ATT235ATG (735T>G), TTT236GAA (736T>G 737T>A 738T>A), AAT237GAT (739A>G), ACT238AGA (743C>G 744T>A), TAT239CAT (745T>C), ACA240AGT (749C>G 750A>T), AAA241CCA (751A>C 752A>C), ACG242ACA (756G>A), CCA243TCA (757C>T), GGA244TTA (760G>T 761G>T), AGA245ATG (764G>T 765A>G), TCA246CAA (766T>C 767C>A), ATA247GTG (769A>G 771A>G), TAC248GTA (772T>G 773A>T 774C>A), AGA249CGT (775A>C 777A>T), AAT250AAC (780T>C), AAT250_GTA251insTGCATCAGTATACAC (780_781insTGCATCAGTATACAC), GTA251ATA (781G>A), ACT252AAT (785C>A), GAA253GAT (789A>T), TTT254TGT (791T>G), AAT255GAA (793A>G 795T>A), AGA257AAT (800G>A 801A>T), GAT258AAA (802G>A 804T>A), GAA259GCG (806A>C 807A>G), TTG260TGT (809T>G 810G>T), GAG261ACG (811G>A 812A>C), TAT263ATA (817T>A 818A>T 819T>A), TCT264GTT (820T>G 821C>T), TTA266GCT (826T>G 827T>C 828A>T), AAA267AGA (830A>G), GAT269TAT (835G>T), AAG270ATT (839A>T 840G>T), AAT271AGT (842A>G), AAA272_GCA276del (844_858delAAATTAATTGCTGCA), ATG277ATT (861G>T), ACG279AAC (866C>A 867G>C), AGT280TCA (868A>T 869G>C 870T>A), AAG281TCG (871A>T 872A>C), CGG284GAG (880C>G 881G>A), TTC285CAT (883T>C 884T>A 885C>T), GCT287AGT (889G>A 890C>G), CAT288GTG (892C>G 893A>T 894T>G), GAT289TCA (895G>T 896A>C 897T>A), AAT290CAA (898A>C 900T>A), AAT291AGA (902A>G 903T>A), TTT292TGT (905T>G), GGA293AAG (907G>A 908G>A 909A>G), AGG294TTG (910A>T 911G>T), TTG295TTT (915G>T), AAA296ACT (917A>C 918A>T), ATG297AAG (920T>A), ACA298TAT (922A>T 923C>A 924A>T), ATA299AAA (926T>A), GAG301GGG (932A>G), TTG302ATC (934T>A 936G>C), GGA303GTA (938G>T), CAT304TCA (940C>T 941A>C 942T>A), CAT305AGA (943C>A 944A>G 945T>A), TGT306TTG (947G>T 948T>G), TGT306_CAG307insGTG (948_949insGTG), CAG307AAA (949C>A 951G>A), CCT308CCG (954T>G), AAC309AAT (957C>T), GTG311ATT (961G>A 963G>T), GCA312TTT (964G>T 965C>T 966A>T), TCT313TCC (969T>C), AAT314AGC (971A>G 972T>C), CAC315CAT (975C>T), CCA316GAA (976C>G 977C>A), GGC317TCA (979G>T 980G>C 981C>A), AAT318TGC (982A>T 983A>G 984T>C), GCT319GCA (987T>A), TCC320TTA (989C>T 990C>A), GAT321AAC (991G>A 993T>C), ATC322GTA (994A>G 996C>A), CAG323CAT (999G>T), TAC324AAC (1000T>A), AAT329CAG (1015A>C 1017T>G), ATA330ATC (1020A>C), AAA331AAC (1023A>C), AAA331_TAT332insAACCAT (1023_1024insAACCAT), TAT332TAC (1026T>C), TTT333AAA (1027T>A 1028T>A 1029T>A), CTT334GTG (1030C>G 1032T>G), AGT335TGG (1033A>T 1035T>G), AAA336GAA (1036A>G), ATT337del (1039_1041delATT), TGG339TTT (1046G>T 1047G>T), CGG340AGA (1048C>A 1050G>A), ATT341CTT (1051A>C), CGT342AGG (1054C>A 1056T>G), GAT343AAA (1057G>A 1059T>A), ATG344ATA (1062G>A), TTA347AAT (1069T>A 1070T>A 1071A>T), TTG348GTA (1072T>G 1074G>A), GAA350GAT (1080A>T), ATT352ATC (1086T>C), AAG353AGG (1088A>G), GAT354GCA (1091A>C 1092T>A), TGT355CTT (1093T>C 1094G>T), TAT356GTG (1096T>G 1097A>T 1098T>G), AGT358TCG (1102A>T 1103G>C 1104T>G), GTT360GGA (1109T>G 1110T>A), AAC361AAT (1113C>T), AGT366TCA (1126A>T 1127G>C 1128T>A), TCT367TCC (1131T>C), GTT368CAG (1132G>C 1133T>A 1134T>G), AAC370TCA (1138A>T 1139A>C 1140C>A), ATA371GTG (1141A>G 1143A>G), CCT373AAG (1147C>A 1148C>A 1149T>G), TTA374TAT (1151T>A 1152A>T), ATT375ATA (1155T>A), AAA376CCA (1156A>C 1157A>C), AGA377GAT (1159A>G 1160G>A 1161A>T), ATT379TTT (1165A>T), TGG380TTA (1169G>T 1170G>A), AGT381ATT (1172G>T), TTG382TGT (1175T>G 1176G>T), TTT383AAA (1177T>A 1178T>A 1179T>A), ACT384ACG (1182T>G), AAT385GAA (1183A>G 1185T>A), CAC386AAA (1186C>A 1188C>A), ATG387TGG (1189A>T 1190T>G), GAT388AAC (1192G>A 1194T>C), CAA389GAA (1195C>G), ACA390GCT (1198A>G 1200A>T), ATT391GTC (1201A>G 1203T>C), GAA393ATG (1207G>A 1208A>T 1209A>G), GTG394TTA (1210G>T 1212G>A), CAC397TAT (1219C>T 1221C>T), ATG398CTA (1222A>C 1224G>A), TCG399GAA (1225T>G 1226C>A 1227G>A), TCA402GAC (1234T>G 1235C>A 1236A>C), GTT403ATA (1237G>A 1239T>A), GAA404AAT (1240G>A 1242A>T), GGT405GGA (1245T>A), AAT407GAG (1249A>G 1251T>G), GTC408TAT (1252G>T 1253T>A 1254C>T), ATC409GTA (1255A>G 1257C>A), ATG410TTA (1258A>T 1260G>A), TTG411TTA (1263G>A), ATT412GAC (1264A>G 1265T>A 1266T>C), CTT413TAT (1267C>T 1268T>A), GGA414GAA (1271G>A), TTG415GTG (1273T>G), AAT416AAC (1278T>C), ATT417TGG (1279A>T 1280T>G 1281T>G), AGT418GAA (1282A>G 1283G>A 1284T>A), TTG419GTG (1285T>G), TAT420AGG (1288T>A 1289A>G 1290T>G), AAT421GGA (1291A>G 1292A>G 1293T>A), GAA422CTA (1294G>C 1295A>T), ATT423GTC (1297A>G 1299T>C), AAG424ATG (1301A>T), CGC425CAA (1304G>A 1305C>A), ACT426AAC (1307C>A 1308T>C), TTG427ATG (1309T>A), AAT428GAT (1312A>G), GTA429del (1315_1317delGTA), GAT430GGG (1319A>G 1320T>G), AGC431AAA (1322G>A 1323C>A), ATA432GTA (1324A>G), ATG434AGA (1331T>G 1332G>A), GTA435ATT (1333G>A 1335A>T), CTT436TTG (1336C>T 1338T>G), TTA438ATG (1342T>A 1344A>G), GAA440GAT (1350A>T), TTC441ACA (1351T>A 1352T>C 1353C>A), AGT442AAG (1355G>A 1356T>G), AGT443AAG (1358G>A 1359T>G), GTT445CTG (1363G>C 1365T>G), AAA446AGT (1367A>G 1368A>T), TCA447GCG (1369T>G 1371A>G), ATT448ATG (1374T>G), AGC449ATA (1376G>T 1377C>A), AGT450TTT (1378A>T 1379G>T), AAA451GAC (1381A>G 1383A>C), TAT453TTT (1388A>T), AAT454GAT (1390A>G), GTT455ACA (1393G>A 1394T>C 1395T>A), GAT456AGA (1396G>A 1397A>G 1398T>A), GAA457TAT (1399G>T 1401A>T), TTG458ATG (1402T>A), GAT459AGA (1405G>A 1406A>G 1407T>A), AAA460GAA (1408A>G), TTG461ACA (1411T>A 1412T>C 1413G>A), TCA464ACG (1420T>A 1422A>G), ATA465ACG (1424T>C 1425A>G), AAA466TCA (1426A>T 1427A>C), TCA467ACA (1429T>A), ACG468ACA (1434G>A), GAG469AAC (1435G>A 1437G>C), GAA470CAA (1438G>C), CTG471CTT (1443G>T), ATT472CGA (1444A>C 1445T>G 1446T>A), GAA473ACA (1447G>A 1448A>C), ATG474CTG (1450A>C), AAG475AAC (1455G>C), AAT476AAA (1458T>A), TCT477AGG (1459T>A 1460C>G 1461T>G), GGA478AAT (1462G>A 1463G>A 1464A>T), ACT479GAA (1465A>G 1466C>A 1467T>A), TTA480CTC (1468T>C 1470A>C), ACT481ATA (1472C>T 1473T>A), GAA482GAT (1476A>T), GAA483GAG (1479A>G), TTT484TAC (1481T>A 1482T>C), GAG485GAC (1485G>C), CTA486TTA (1486C>T), CTG487GAA (1489C>G 1490T>A 1491G>A), ATC488CTT (1492A>C 1494C>T), TCC489TCA (1497C>A), AAC490_GAT493del (1498_1509delAACTCAGAAGAT), GAC494GAT (1512C>T), AAT495GTT (1513A>G 1514A>T), TGA497TAA (1520G>A)
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43