Genome Detective

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 1)

Assembly

Coverage Length

3302 (1 contig(s))

Depth Of Coverage

5815.6

Number Of Reads

171572

Reads Per Million

11070.59 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

Download minority variants (vcf)

SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Rotavirus A (Taxonomy ID: 28875)

Reference Genome

NC_011507.2

NT Identity (%)

86.0085

AA Identity (%)

97.2452

Number Of Stop Codons

Number Of CDS

Alignment

Segment

segment 1

Alignment Score

4756.0 (NT) + 6962.0 (AA) = 11718.0

Concordance (%)

85.3646

Alignment Method

Global, seeded, nucleotide + amino acids (AGA)

NT Alignment

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Region Bam File

Download BAM file (.bam)

CDS Alignment

Download CDS alignment (FASTA)

Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Sequence starts at position 1 and ends at position 3302 relative to NC_011507.2 reference sequence.

NC_011507.2

SRR3458562_Metagenome_example-NC_011507.2-89-3

NC_011507.2

SRR3458562_Metagenome_example-NC_011507.2-89-3

GGCTATTAAAGCTGTACAATGGGGAAGTACAATCTAATCTTGTCAGAATATCTATCATTTATATATAATTCACAATCTGCAGTTCAAATTCCAATATATTACTCTTCCAACAGTGAATTAGAAAATAGATGTATTGAATTTCATTCCAAGTGTTTAGAGAACTCAAAGAATGGGTTATCGTTAAGAAAGTTGTTTGTTGAATATAATGATGTCATAGAAAATGCCACATTACTGTCAATACTATCATATTCTTACGACAAGTATAACGCTGTTGAAAGAAAATTGGTGAAGTATGCGAAAGGCAAACCATTGGAGGCAGACTTAACAGTGAATGAATTGGATTATGAGAACAATAAAATAACATCTGAATTATTTCCAACAGCGGAGGAATATACGGACTCACTAATGGATCCAGCAATTTTAACTTCGCTATCATCAAATTTAAATGCAGTCATGTTCTGGTTGGAAAAACATGAAAATGATGTCGCTGAAAAACTTAAAGTTTATAAAAGGAGATTAGACCTATTCACCATAGTAGCCTCAACGATAAATAAATATGGCGTACCAAGGCATAACGCAAAGTACAGATATGAATACGACGTAATGAAAGATAAACCATACTACTTAGTGACATGGGCAAATTCTTCAATTGAAATGTTAATGTCAGTTTTCTCTCATGACGACTATTTGATAGCAAAAGAGTTAATAGTGTTATCATATTCTAATAGATCTACTCTAGCAAAGTTAGTGTCATCACCAATGTCGATTTTGGTAGCCTTGGTGGATATTAATGGAACATTTATTACAAATGAAGAATTAGAATTGGAATTTTCAAATAAATATGTACGAGCAATAGTTCCGGATCAAACATTTGACGAATTAAATCAAATGCTTGACAATATGAGGAAAGCTGGATTAGTTGACATACCTAAGATGATACAGGACTGGTTAGTTGATCGTTCTATCGAAAAATTTCCATTAATGGCTAAGATATATTCAT

GGTCGTTTCATGTTGGATTTAGAAAGCAAAAAATGCTAGATGCTGCGCTGGATCAATTGAAAACTGAGTATACAGAAAATGTGGACGATGAAATGTATCGGGAATATACAATGTTAATAAGAGATGAAGTAGTTAAAATGCTTGAAGAACCAGTTAAACATGATGATCACTTGCTACGAGATTCTGAGTTAGCTGGTTTACTATCAATGTCGTCAGCATCGAATGGTGAGTCAAGGCAGCTAAAGTTTGGTAGGAAAACAATTTTTTCAACTAAAAAGAATATGCATGTCATGGATGATATGGCTAACGAAAGATACACGCCTGGTATAATACCACCAGTGAATGTTGATAAACCAATACCATTAGGAAGAAGAGATGTTCCAGGAAGAAGGACTAGAATAATATTCATTCTGCCATACGAATATTTCATAGCACAGCACGCTGTAGTTGAAAAAATGTTGATTTACGCAAAACATACGAGAGAATACGCTGAATTTTATTCACAATCAAACCAATTATTGTCATACGGCGATGTAACGCGTTTTTTGTCTAATAACACAATGGTCTTGTATACGGATGTATCTCAGTGGGATTCGTCTCAGCATAATACACAGCCATTTAGGAAAGGAATAATAATGGGACTGGACATATTAGCTAACATGACTAATGATGCTAAAGTTCTTCAGACATTAAATTTATACAAACAAACACAAATCAATCTCATGGATTCATACGTTCAAATACCAGATGGCAACGTCATTAAGAAAATACAATACGGGGCAGTAGCATCAGGAGAGAAACAAACGAAAGCAGCAAATTCAATAGCAAATTTGGCACTGATTAAAACGGTTTTGTCACGTATTTCTAACAAACATTCATTCGCAACAAAAATAATAAGAGTTGATGGAGATGATAACTATGCGGTGCTACAATTTAATACAGAGGTGACTAAGCAGATGATCCAAGACGTATCGAACGATGTAAGAGAAACTTATGCACG

CATGAATGCTAAAGTTAAAGCTCTGGTATCCACAGTAGGAATAGAAATTGCTAAAAGGTACATTGCAGGTGGAAAAATATTTTTTCGAGCTGGAATAAATCTACTTAATAATGAAAAGAGAGGGCAGAGTACGCAGTGGGATCAAGCAGCAATTTTATATTCAAATTATATTGTAAATAGACTTAGAGGATTTGAAACTGATAGGGAGTTTATTTTAACTAAGATAATGCAGATGACGTCAGTCGCAATTACTGGATCATTAAGACTATTTCCTTCTGAACGCGTATTAACTACGAATTCAACATTTAAAGTATTTGACTCGGAGGATTTTATTATAGAGTACGGAACGACTGATGACGAAGTATATATACAAAGAGCGTTCATGTCTTTATCAAGTCAGAAATCAGGAATAGCCGATGAGATAGCGGCATCATCAACATTTAAAAATTACGTCACGAGACTATCTGAACAGTTATTATTTTCAAAGAATAATATAGTGTCCAGAGGAATAGCTTTGACTGAAAAAGCGAAATTGAATTCATACGCTCCAATATCGCTTGAGAAAAGACGTGCACAGATATCAGCTTTATTGACTATGTTGCAGAAACCGGTCACTTTCAAATCAAGTAAAATAACAATAAATGACATACTCAGAGATATAAAACCATTTTTTACAGTAAGTGATGCACACTTACCTATACAATACCAAAAATTTATGCCAACTTTGCCAGATAACGTACAGTATATAATTCAATGTATAGGATCCAGAACTTATCAAATTGAAGATGACGGTTCGAAGTCAGCCATATCTAGACTAATATCAAAGTATTCAGTTTATAAGCCATCAATTGAAGAATTGTATAAAGTGATTTCATTGCATGAAAACGAAATACAATTATATCTGATTTCATTAGGAATACCGAAAATAGACGCTGACACGTATGTTGGATCAAAGATTTATTCTCAAGATAAGTATAGAATACTAGAATCATACGTGTAC

AATTTATTGTCCATTAATTATGGATGCTATCAATTATTTGATTTCAATTCACCGGACTTGGAGAAGCTGATAAGAATACCATTTAAGGGAAAAATACCAGCTGTTACATTCATATTACACTTATATGCAAAGCTAGAAGTTATAAACTACGCTATAAAAAATGGTTCATGGATAAGCCTATTTTGCAATTACCCTAAATCAGAAATGATAAAATTATGGAAGAAGATGTGGAACATCACGTCATTACGTTCGCCGTACACTAACGCGAACTTCTTTCAAGATTAGAACGCTTAGATGTGACC

GGCTATTAAAGCTATACAATGGGGAAGTATAATCTAATCTTGTCAGAATATTTATCATTTATATATAACTCACAATCTGCAGTTCAAATTCCAATTTATTATTCTTCCAATAGTGAATTAGAGAATAGATGTATTGAATTTCATTCTAAATGCTTAGAAAACTCAAAGAATGGACTATCACTAAAAAAACTCTTTGTTGAATATAGCGATGTTATAGAGAATGCCACACTGTTGTCAATATTATCGTACTCTTACGATAAATATAACGCTGTTGAAAGGAAATTAGTAAAATATGCAAAAGGTAAGCCGCTAGAAGCAGATTTGACAGTGAATGAGTTGGATTATGAAAATAACAAGATAACATCTGAGCTTTTCCCAACAGCAGAGGAATATACTGATTCATTGATGGATCCAGCAATTTTAACTTCATTATCATCAAATTTGAATGCAGTTATGTTCTGGTTGGAAAAACATGAAAATGATGCTGCTGAAAAACTCAAAATTTACAAAAGGAGATTGGACTTATTTACTATAGTAGCTTCAACAGTAAATAAATATGGTGTACCAAGGCACAATGAGAAATATAGATATGAATATGAAGTGATGAAAGATAAGCCGTACTACTTGGTAACATGGGCAAATTCTTCAATTGAAATGCTAATGTCAGTTTTTTCTCATGAAGATTATTTAATTGCGAGAGAACTGATAGTACTGTCATATTCTAATAGATCGACTCTAGCAAAACTGGTGTCATCACCAATGTCAATTCTGGTAGCTTTAGTGGATATAAACGGAACATTTATTACGAATGAAGAATTAGAGCTAGAGTTTTCAAACAAATATGTACGAGCAATAGTTCCTGACCAAACATTTGACGAATTAAAACAGATGCTTGACAACATGAGAAAAGCTGGGTTAACTGACATACCTAAGATGATACAGGACTGGTTAGCCGATTGCTCTATTGAAAAATTTCCATTGATGGCTAAAATATATTCGT

GGTCATTTCATGTCGGATTCAGGAAGCAGAAAATGTTGGACGCCGCGTTAGATCAATTGAAAACTGAGTATACAGAAGATATAGATGATGAAATGTATCGAGAATATACAATGCTAATAAGAGATGAAGTTGTGAAAATGCTTAAGGAACCAGTAAAGCATGATGATCATTTGTTACAGGATTCTGAATTGGCTGGTTTACTATCAATGTCATCAGCGTCGAATGGTGAATCAAGACAACTAAAATTTGGTAGAAAGACAATTTTTTCGACTAAAAAGAATATGCATGTAATGGATGACATGGCTAATGGAAGGTATACGCCAGGCATAATACCACCAGTGAATGTCGATAAACCGATACCATTAGGAAGGAGAGATGTACCAGGAAGACGGACTAGAATAATATTCATCTTACCATATGAATATTTTATAGCACAACATGCCGTAGTTGAAAAAATGCTAATTTATGCGAAACATACTAGAGAGTATGCTGAATTCTACTCACAGTCAAATCAGTTATTGTCTTATGGTGATGTTACACGCTTTTTATCTAATAACTCTATGGTGCTATATACAGACGTATCCCAGTGGGACTCATCTCAACACAATACGCAGCCATTTAGGAAAGGGATAATTATGGGGTTGGACATGCTAGCTAATATGACTAATGATGCTAGAGTCATCCAGACACTAAACTTATATAAACAGACGCAAATTAATCTAATGGATTCATACGTTCAAATACCAGATGGTGATGTTATTAAAAAGATACAATATGGGGCTGTAGCGTCAGGAGAAAAGCAGACGAAAGCAGCGAATTCAATAGCAAATTTAGCACTGATTAAAACAGTTTTATCACGTATTTCTAACAAATATTCATTCGCGACGAAGATAATAAGAGTTGACGGAGATGACAATTACGCAGTATTGCAGTTCAATACAGAAGTAACTAAACAAATGGTTCAAGATGTATCAAACGACGTGAGAGAAACGTATGCGCG

AATGAATGCTAAAGTCAAAGCTTTAGTATCTACAGTGGGAATAGAAATAGCTAAAAGGTATATTGCAGGTGGGAAAATATTCTTTAGAGCTGGAATAAATTTACTGAATAACGAAAAGAGAGGACAAAGTACACAGTGGGATCAAGCAGCTGTTCTATATTCGAACTATATTGTGAATAGACTTCGAGGATTTGAAACTGACAGAGAGTTCATTTTGACTAAAATAATGCAAATGACATCAGTTGCTATTACAGGATCACTAAGACTCTTTCCTTCTGAACGCGTGTTAACCACGAACTCTACGTTTAAAGTGTTTGACTCGGAGGACTTTATTATAGAGTATGGGACAACTGACGACGAAGTATACATACAAAGAGCGTTCATGTCTTTATCTAGTCAGAAGTCAGGAATAGCTGATGAGATAGCTGCATCATCAACGTTTAAGAATTATGTATCTAGATTATCTGAGCAGCTGTTATTTTCAAAGAATAATATAGTGTCTAAGGGAATAGCATTGACTGAAAAAGCAAAATTGAACTCATACGCGCCAATATCACTTGAGAAAAGACGCGCGCAAATATCAGCTTTGCTGACTATGCTGCAAAAACCGGTTACTTTTAAATCAAGTAAGATAACAATAAATGATATACTTAGAGATATAAAGCCATTTTTCACTGTAAGCGAAGCGCATTTGCCGATACAATATCAAAAATTTATGCCAACTTTACCAGACAATGTACAGTATATAATTCAGTGTATAGGATCCAGAACATATCAAATTGAAGATGACGGTTCAAAGTCAGCTATATCTCGACTAATATCAAAGTACTCAGTTTACAAGCCGTCAATCGAAGAGTTATACAAAGTAATTTCACTACATGAGAATGAAATACAACTATATTTGATCTCACTAGGCATACCGAAAATAGACGCTGATACGTACGTCGGATCGAAAATTTATTCTCAAGATAAATACAGGATATTAGAGTCGTATGTATAT

AATTTATTGTCTATTAATTATGGATGTTATCAGCTATTCGACTTCAATTCACCAGATCTAGAAAAGCTGATCAGAATACCGTTTAAAGGAAAGATACCAGCTGTCACTTTTATATTGCATTTATACGCTAAGCTGGAAGTTATAAATCATGCCATTAAAAATGGCTCATGGATAAGTTTATTCTGTAACTACCCAAAATCAGAAATGATAAAATTATGGAAGAAAATGTGGAACATTACGTCACTACGTTCACCGTATACCAATGCAAACTTCTTTCAAGATTAGAGCGCTTAGATGTGACC

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VP1

MGKYNLILSEYLSFIYNSQSAVQIPIYYSSNSELENRCIEFHSKCLENSKNGLSLRKLFVEYNDVIENATLLSILSYSYDKYNAVERKLVKYAKGKPLEADLTVNELDYENNKITSELFPTAEEYTDSLMDPAILTSLSSNLNAVMFWLEKHENDVAEKLKVYKRRLDLFTIVASTINKYGVPRHNAKYRYEYDVMKDKPYYLVTWANSSIEMLMSVFSHDDYLIAKELIVLSYSNRSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQTFDELNQMLDNMRKAGLVDIPKMIQDWLVDRSIEKFPLMAKIYSWSFHVGFRKQKMLDAALDQLKTEYTENVDDEMYREYTMLIRDEVVKMLEEPVKHDDHLLRDSELAGLLSMSSASNGESRQLKFGRKTIFSTKKNMHVMDDMANERYTPGIIPPVNVDKPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSYGDVTRFLSNNTMVLYTDVSQWDSSQHNTQPFRKGIIMGLDILANMTNDAKVLQTLNLYKQTQINLMDSYVQIPDGNVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRISNKHSFATKIIRVDGDDNYAVLQFNTEVTKQMIQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGINLLNNEKRGQSTQWDQAAILYSNYIVNRLRGFETDREFILTKIMQMTSVAITGSLRLFPSERVLTTNSTFKVFDSEDFIIEYGTTDDEVYIQRAFMSLSSQKSGIADEIAASSTFKNYVTRLSEQLLFSKNNIVSRGIALTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKSSKITINDILRDIKPFFTVSDAHLPIQYQKFMPTLPDNVQYIIQCIGSRTYQIEDDGSKSAISRLISKYSVYKPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSQDKYRILESYVYNLLSIN

MGKYNLILSEYLSFIYNSQSAVQIPIYYSSNSELENRCIEFHSKCLENSKNGLSLKKLFVEYSDVIENATLLSILSYSYDKYNAVERKLVKYAKGKPLEADLTVNELDYENNKITSELFPTAEEYTDSLMDPAILTSLSSNLNAVMFWLEKHENDAAEKLKIYKRRLDLFTIVASTVNKYGVPRHNEKYRYEYEVMKDKPYYLVTWANSSIEMLMSVFSHEDYLIARELIVLSYSNRSTLAKLVSSPMSILVALVDINGTFITNEELELEFSNKYVRAIVPDQTFDELKQMLDNMRKAGLTDIPKMIQDWLADCSIEKFPLMAKIYSWSFHVGFRKQKMLDAALDQLKTEYTEDIDDEMYREYTMLIRDEVVKMLKEPVKHDDHLLQDSELAGLLSMSSASNGESRQLKFGRKTIFSTKKNMHVMDDMANGRYTPGIIPPVNVDKPIPLGRRDVPGRRTRIIFILPYEYFIAQHAVVEKMLIYAKHTREYAEFYSQSNQLLSYGDVTRFLSNNSMVLYTDVSQWDSSQHNTQPFRKGIIMGLDMLANMTNDARVIQTLNLYKQTQINLMDSYVQIPDGDVIKKIQYGAVASGEKQTKAANSIANLALIKTVLSRISNKYSFATKIIRVDGDDNYAVLQFNTEVTKQMVQDVSNDVRETYARMNAKVKALVSTVGIEIAKRYIAGGKIFFRAGINLLNNEKRGQSTQWDQAAVLYSNYIVNRLRGFETDREFILTKIMQMTSVAITGSLRLFPSERVLTTNSTFKVFDSEDFIIEYGTTDDEVYIQRAFMSLSSQKSGIADEIAASSTFKNYVSRLSEQLLFSKNNIVSKGIALTEKAKLNSYAPISLEKRRAQISALLTMLQKPVTFKSSKITINDILRDIKPFFTVSEAHLPIQYQKFMPTLPDNVQYIIQCIGSRTYQIEDDGSKSAISRLISKYSVYKPSIEELYKVISLHENEIQLYLISLGIPKIDADTYVGSKIYSQDKYRILESYVYNLLSIN

YGCYQLFDFNSPDLEKLIRIPFKGKIPAVTFILHLYAKLEVINYAIKNGSWISLFCNYPKSEMIKLWKKMWNITSLRSPYTNANFFQD*

YGCYQLFDFNSPDLEKLIRIPFKGKIPAVTFILHLYAKLEVINHAIKNGSWISLFCNYPKSEMIKLWKKMWNITSLRSPYTNANFFQD*

Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	1	3302	100%	4756	72.0%	3302 (100%)	2840 (86.0%)	0/0
Mutations:	14G>A, 30C>T, 52C>T, 69T>C, 96A>T, 102C>T, 111C>T, 123A>G, 147C>T, 150G>A, 153T>C, 159G>A, 174G>A, 175T>C, 180G>A, 181T>C, 185G>A, 189G>A, 190T>C, 192G>C, 206A>G, 207T>C, 213C>T, 219A>G, 229T>C, 231A>G, 232C>T, 241C>T, 246A>G, 249T>C, 258C>T, 261G>A, 279A>G, 285G>A, 288G>A, 291G>A, 297G>A, 303C>T, 306A>G, 309A>G, 310T>C, 312G>A, 315G>A, 321C>T, 324A>G, 336A>G, 348G>A, 351C>T, 354T>C, 357A>G, 369A>G, 370T>C, 372A>T, 375T>C, 384G>A, 396G>T, 399C>T, 403C>T, 405A>G, 429G>A, 430C>T, 444A>G, 453C>T, 485T>C, 486C>T, 498T>C, 502G>A, 507T>C, 519A>G, 523C>T, 528C>T, 531C>T, 540C>T, 546G>A, 547A>G, 561C>T, 573T>C, 576C>T, 578C>A, 579A>G, 582G>A, 585C>T, 597C>T, 600C>A, 603A>G, 615A>G, 618A>G, 627A>G, 630G>A, 658T>C, 672C>T, 681C>A, 684C>T, 690G>A, 693A>T, 696A>G, 698A>G, 702G>A, 703T>C, 705A>G, 711G>A, 712T>C, 714A>G, 732T>G, 744G>A, 745T>C, 747A>G, 765G>A, 769T>C, 777C>T, 780G>A, 789T>A, 792T>C, 807A>G, 822A>G, 823T>C, 825G>A, 828A>G, 837T>C, 861G>T, 864T>C, 885T>A, 888A>G, 900T>C, 906G>A, 915A>G, 919G>A, 920T>C, 953T>C, 954T>C, 958C>T, 960T>C, 966C>T, 981A>G, 990G>A, 999A>G, 1005G>A, 1014T>C, 1020T>C, 1023A>G, 1029A>G, 1036C>T, 1038A>G, 1041T>C, 1044T>C, 1048C>T, 1050G>A, 1078A>G, 1081G>A, 1083G>A, 1086C>T, 1101G>A, 1114T>C, 1131A>T, 1134T>G, 1144G>A, 1146A>G, 1155T>A, 1158A>G, 1170C>T, 1174C>T, 1178G>A, 1179A>G, 1188G>A, 1191A>G, 1212G>A, 1218A>G, 1230G>A, 1236G>A, 1239G>A, 1245G>A, 1254G>A, 1257A>G, 1269A>G, 1290C>A, 1299T>C, 1308C>T, 1310A>G, 1314A>G, 1317C>T, 1323T>A, 1326T>C, 1347T>C, 1356A>G, 1371A>G, 1380T>A, 1390A>C, 1410T>C, 1411C>T, 1413G>A, 1419C>T, 1428C>T, 1437G>A, 1440C>T, 1443T>C, 1459T>C, 1461G>A, 1467C>T, 1470A>G, 1479G>T, 1485A>G, 1488C>T, 1497T>C, 1500T>C, 1506A>G, 1512C>T, 1515A>G, 1524A>T, 1527C>T, 1530C>T, 1536A>T, 1539G>A, 1542T>C, 1548G>A, 1558A>T, 1560A>T, 1566C>G, 1567T>C, 1569G>A, 1575G>A, 1578T>C, 1584T>C, 1593T>C, 1596G>A, 1602G>A, 1605T>C, 1611A>G, 1629A>G, 1635A>T, 1641A>G, 1642C>T, 1650A>G, 1651T>C, 1659C>T, 1676A>G, 1680T>C, 1681C>A, 1683T>C, 1690T>C, 1695T>C, 1701C>T, 1707A>G, 1710A>G, 1716C>T, 1722C>A, 1752C>T, 1753A>G, 1755C>T, 1758C>T, 1764G>A, 1767A>G, 1776C>T, 1782A>T, 1788A>G, 1797G>A, 1800A>G, 1803A>G, 1815A>G, 1833G>A, 1848G>A, 1854G>A, 1873C>T, 1884A>G, 1887A>G, 1890A>G, 1905T>C, 1914T>C, 1917C>T, 1920T>C, 1923G>A, 1926G>A, 1927C>T, 1929A>G, 1932A>G, 1935T>C, 1944G>A, 1947G>A, 1953G>A, 1956G>A, 1960A>G, 1962C>T, 1968C>T, 1974G>A, 1980T>C, 1983A>G, 1992T>G, 1998A>G, 2001C>A, 2016T>C, 2023C>T, 2025G>A, 2031C>T, 2037A>G, 2049T>A, 2061C>T, 2073A>G, 2082T>C, 2086C>A, 2101C>T, 2106T>G, 2112T>C, 2124G>A, 2127G>A, 2133G>A, 2151A>T, 2152A>G, 2155T>C, 2163A>G, 2166T>C, 2175A>G, 2185A>C, 2202T>C, 2205G>A, 2211T>C, 2217A>G, 2223G>A, 2232G>A, 2238G>A, 2244C>T, 2247A>T, 2253T>A, 2260T>C, 2268A>C, 2286A>G, 2292T>C, 2298T>C, 2301A>T, 2304A>G, 2313A>G, 2328T>C, 2343C>T, 2346A>G, 2349G>A, 2355T>C, 2367T>C, 2394A>T, 2403A>G, 2415C>T, 2427G>T, 2439A>G, 2445A>G, 2451C>T, 2454C>A, 2455A>T, 2457G>T, 2461C>T, 2469A>G, 2473T>C, 2475A>G, 2502C>T, 2504G>A, 2505A>G, 2514T>A, 2529G>A, 2538T>C, 2547T>G, 2556G>A, 2571T>C, 2574A>G, 2577G>A, 2589A>G, 2590T>C, 2599T>C, 2604G>A, 2613C>T, 2619C>T, 2631A>G, 2646C>T, 2652C>T, 2664A>G, 2673T>C, 2676A>T, 2682T>C, 2685T>A, 2688A>G, 2691C>T, 2694A>G, 2697T>G, 2706C>T, 2727G>A, 2733T>C, 2736C>T, 2754A>G, 2772T>A, 2796G>A, 2805C>T, 2812A>C, 2829T>C, 2838T>C, 2844A>G, 2850T>C, 2856A>G, 2859G>A, 2862T>C, 2868G>A, 2875T>C, 2877G>A, 2883A>G, 2886C>T, 2896T>C, 2902C>T, 2907T>C, 2911T>C, 2916A>C, 2937C>T, 2943T>C, 2946T>C, 2952A>G, 2955G>A, 2973G>A, 2976T>C, 2979A>G, 2983C>T, 2988A>G, 2991A>G, 2994C>T, 2997G>A, 3000C>T, 3012C>T, 3027C>T, 3033A>G, 3034T>C, 3039T>C, 3042T>C, 3054G>A, 3057C>T, 3058T>C, 3060G>A, 3063G>A, 3072A>C, 3081A>G, 3087G>A, 3093A>G, 3105T>C, 3108A>T, 3111C>T, 3117A>G, 3120C>T, 3126T>C, 3129A>T, 3135A>G, 3147C>T, 3148T>C, 3150C>T, 3153T>C, 3156A>T, 3165T>C, 3177C>T, 3178C>T, 3183T>C, 3186C>T, 3189T>C, 3195T>A, 3225G>A, 3237C>T, 3244T>C, 3252G>A, 3258C>T, 3261T>C, 3264C>T, 3267G>A, 3287A>G
CDS

VP1	1	1089	100%	6962	97.7%	1089 (100%)	1059 (97.2%)	0/0/0/0	1
Protein mutations:	R56K (185G>A), N63S (206A>G 207T>C), V156A (485T>C 486C>T), V162I (502G>A), I177V (547A>G), A187E (578C>A 579A>G), D194E (600C>A), D221E (681C>A), K227R (698A>G), N289K (885T>A), V301T (919G>A 920T>C), V312A (953T>C 954T>C), R314C (958C>T 960T>C), N354D (1078A>G), V355I (1081G>A 1083G>A), E376K (1144G>A 1146A>G), R387Q (1178G>A 1179A>G), E431G (1310A>G), T514S (1558A>T 1560A>T), I544M (1650A>G), K553R (1676A>G), L555I (1681C>A 1683T>C), N579D (1753A>G 1755C>T), H619Y (1873C>T), I648V (1960A>G 1962C>T), I712V (2152A>G), T813S (2455A>T 2457G>T), R829K (2504G>A 2505A>G), D889E (2685T>A), Y1044H (3148T>C 3150C>T)
Codon mutations:	TAC4TAT (30C>T), CTA12TTA (52C>T), AAT17AAC (69T>C), ATA26ATT (96A>T), TAC28TAT (102C>T), AAC31AAT (111C>T), GAA35GAG (123A>G), TCC43TCT (147C>T), AAG44AAA (150G>A), TGT45TGC (153T>C), GAG47GAA (159G>A), GGG52GGA (174G>A), TTA53CTA (175T>C), TCG54TCA (180G>A), TTA55CTA (181T>C), AGA56AAA (185G>A), AAG57AAA (189G>A), TTG58CTC (190T>C 192G>C), AAT63AGC (206A>G 207T>C), GTC65GTT (213C>T), GAA67GAG (219A>G), TTA71CTG (229T>C 231A>G), CTG72TTG (232C>T), CTA75TTA (241C>T), TCA76TCG (246A>G), TAT77TAC (249T>C), GAC80GAT (258C>T), AAG81AAA (261G>A), AGA87AGG (279A>G), TTG89TTA (285G>A), GTG90GTA (288G>A), AAG91AAA (291G>A), GCG93GCA (297G>A), GGC95GGT (303C>T), AAA96AAG (306A>G), CCA97CCG (309A>G), TTG98CTA (310T>C 312G>A), GAG99GAA (315G>A), GAC101GAT (321C>T), TTA102TTG (324A>G), GAA106GAG (336A>G), GAG110GAA (348G>A), AAC111AAT (351C>T), AAT112AAC (354T>C), AAA113AAG (357A>G), GAA117GAG (369A>G), TTA118CTT (370T>C 372A>T), TTT119TTC (375T>C), GCG122GCA (384G>A), ACG126ACT (396G>T), GAC127GAT (399C>T), CTA129TTG (403C>T 405A>G), TCG137TCA (429G>A), CTA138TTA (430C>T), TTA142TTG (444A>G), GTC145GTT (453C>T), GTC156GCT (485T>C 486C>T), CTT160CTC (498T>C), GTT162ATT (502G>A), TAT163TAC (507T>C), TTA167TTG (519A>G), CTA169TTA (523C>T), TTC170TTT (528C>T), ACC171ACT (531C>T), GCC174GCT (540C>T), ACG176ACA (546G>A), ATA177GTA (547A>G), GGC181GGT (561C>T), CAT185CAC (573T>C), AAC186AAT (576C>T), GCA187GAG (578C>A 579A>G), AAG188AAA (582G>A), TAC189TAT (585C>T), TAC193TAT (597C>T), GAC194GAA (600C>A), GTA195GTG (603A>G), AAA199AAG (615A>G), CCA200CCG (618A>G), TTA203TTG (627A>G), GTG204GTA (630G>A), TTA214CTA (658T>C), TTC218TTT (672C>T), GAC221GAA (681C>A), GAC222GAT (684C>T), TTG224TTA (690G>A), ATA225ATT (693A>T), GCA226GCG (696A>G), AAA227AGA (698A>G), GAG228GAA (702G>A), TTA229CTG (703T>C 705A>G), GTG231GTA (711G>A), TTA232CTG (712T>C 714A>G), TCT238TCG (732T>G), AAG242AAA (744G>A), TTA243CTG (745T>C 747A>G), TCG249TCA (765G>A), TTG251CTG (769T>C), GCC253GCT (777C>T), TTG254TTA (780G>A), ATT257ATA (789T>A), AAT258AAC (792T>C), ACA263ACG (807A>G), GAA268GAG (822A>G), TTG269CTA (823T>C 825G>A), GAA270GAG (828A>G), AAT273AAC (837T>C), CCG281CCT (861G>T), GAT282GAC (864T>C), AAT289AAA (885T>A), CAA290CAG (888A>G), AAT294AAC (900T>C), AGG296AGA (906G>A), GGA299GGG (915A>G), GTT301ACT (919G>A 920T>C), GTT312GCC (953T>C 954T>C), CGT314TGC (958C>T 960T>C), ATC316ATT (966C>T), TTA321TTG (981A>G), AAG324AAA (990G>A), TCA327TCG (999A>G), TCG329TCA (1005G>A), GTT332GTC (1014T>C), TTT334TTC (1020T>C), AGA335AGG (1023A>G), CAA337CAG (1029A>G), CTA340TTG (1036C>T 1038A>G), GAT341GAC (1041T>C), GCT342GCC (1044T>C), CTG344TTA (1048C>T 1050G>A), AAT354GAT (1078A>G), GTG355ATA (1081G>A 1083G>A), GAC356GAT (1086C>T), CGG361CGA (1101G>A), TTA366CTA (1114T>C), GTA371GTT (1131A>T), GTT372GTG (1134T>G), GAA376AAG (1144G>A 1146A>G), GTT379GTA (1155T>A), AAA380AAG (1158A>G), CAC384CAT (1170C>T), CTA386TTA (1174C>T), CGA387CAG (1178G>A 1179A>G), GAG390GAA (1188G>A), TTA391TTG (1191A>G), TCG398TCA (1212G>A), GCA400GCG (1218A>G), GAG404GAA (1230G>A), AGG406AGA (1236G>A), CAG407CAA (1239G>A), AAG409AAA (1245G>A), AGG412AGA (1254G>A), AAA413AAG (1257A>G), TCA417TCG (1269A>G), GTC424GTA (1290C>A), GAT427GAC (1299T>C), AAC430AAT (1308C>T), GAA431GGA (1310A>G), AGA432AGG (1314A>G), TAC433TAT (1317C>T), CCT435CCA (1323T>A), GGT436GGC (1326T>C), GTT443GTC (1347T>C), CCA446CCG (1356A>G), AGA451AGG (1371A>G), GTT454GTA (1380T>A), AGG458CGG (1390A>C), ATT464ATC (1410T>C), CTG465TTA (1411C>T 1413G>A), TAC467TAT (1419C>T), TTC470TTT (1428C>T), CAG473CAA (1437G>A), CAC474CAT (1440C>T), GCT475GCC (1443T>C), TTG481CTA (1459T>C 1461G>A), TAC483TAT (1467C>T), GCA484GCG (1470A>G), ACG487ACT (1479G>T), GAA489GAG (1485A>G), TAC490TAT (1488C>T), TTT493TTC (1497T>C), TAT494TAC (1500T>C), CAA496CAG (1506A>G), AAC498AAT (1512C>T), CAA499CAG (1515A>G), TCA502TCT (1524A>T), TAC503TAT (1527C>T), GGC504GGT (1530C>T), GTA506GTT (1536A>T), ACG507ACA (1539G>A), CGT508CGC (1542T>C), TTG510TTA (1548G>A), ACA514TCT (1558A>T 1560A>T), GTC516GTG (1566C>G), TTG517CTA (1567T>C 1569G>A), ACG519ACA (1575G>A), GAT520GAC (1578T>C), TCT522TCC (1584T>C), GAT525GAC (1593T>C), TCG526TCA (1596G>A), CAG528CAA (1602G>A), CAT529CAC (1605T>C), ACA531ACG (1611A>G), GGA537GGG (1629A>G), ATA539ATT (1635A>T), GGA541GGG (1641A>G), CTG542TTG (1642C>T), ATA544ATG (1650A>G), TTA545CTA (1651T>C), AAC547AAT (1659C>T), AAA553AGA (1676A>G), GTT554GTC (1680T>C), CTT555ATC (1681C>A 1683T>C), TTA558CTA (1690T>C), AAT559AAC (1695T>C), TAC561TAT (1701C>T), CAA563CAG (1707A>G), ACA564ACG (1710A>G), ATC566ATT (1716C>T), CTC568CTA (1722C>A), GGC578GGT (1752C>T), AAC579GAT (1753A>G 1755C>T), GTC580GTT (1758C>T), AAG582AAA (1764G>A), AAA583AAG (1767A>G), TAC586TAT (1776C>T), GCA588GCT (1782A>T), GCA590GCG (1788A>G), GAG593GAA (1797G>A), AAA594AAG (1800A>G), CAA595CAG (1803A>G), GCA599GCG (1815A>G), TTG605TTA (1833G>A), ACG610ACA (1848G>A), TTG612TTA (1854G>A), CAT619TAT (1873C>T), GCA622GCG (1884A>G), ACA623ACG (1887A>G), AAA624AAG (1890A>G), GAT629GAC (1905T>C), GAT632GAC (1914T>C), AAC633AAT (1917C>T), TAT634TAC (1920T>C), GCG635GCA (1923G>A), GTG636GTA (1926G>A), CTA637TTG (1927C>T 1929A>G), CAA638CAG (1932A>G), TTT639TTC (1935T>C), GAG642GAA (1944G>A), GTG643GTA (1947G>A), AAG645AAA (1953G>A), CAG646CAA (1956G>A), ATC648GTT (1960A>G 1962C>T), GAC650GAT (1968C>T), TCG652TCA (1974G>A), GAT654GAC (1980T>C), GTA655GTG (1983A>G), ACT658ACG (1992T>G), GCA660GCG (1998A>G), CGC661CGA (2001C>A), GTT666GTC (2016T>C), CTG669TTA (2023C>T 2025G>A), TCC671TCT (2031C>T), GTA673GTG (2037A>G), ATT677ATA (2049T>A), TAC681TAT (2061C>T), GGA685GGG (2073A>G), TTT688TTC (2082T>C), CGA690AGA (2086C>A), CTA695TTA (2101C>T), CTT696CTG (2106T>G), AAT698AAC (2112T>C), GGG702GGA (2124G>A), CAG703CAA (2127G>A), ACG705ACA (2133G>A), GCA711GCT (2151A>T), ATT712GTT (2152A>G), TTA713CTA (2155T>C), TCA715TCG (2163A>G), AAT716AAC (2166T>C), GTA719GTG (2175A>G), AGA723CGA (2185A>C), GAT728GAC (2202T>C), AGG729AGA (2205G>A), TTT731TTC (2211T>C), TTA733TTG (2217A>G), AAG735AAA (2223G>A), CAG738CAA (2232G>A), ACG740ACA (2238G>A), GTC742GTT (2244C>T), GCA743GCT (2247A>T), ACT745ACA (2253T>A), TTA748CTA (2260T>C), CTA750CTC (2268A>C), GTA756GTG (2286A>G), ACT758ACC (2292T>C), AAT760AAC (2298T>C), TCA761TCT (2301A>T), ACA762ACG (2304A>G), GTA765GTG (2313A>G), GAT770GAC (2328T>C), TAC775TAT (2343C>T), GGA776GGG (2346A>G), ACG777ACA (2349G>A), GAT779GAC (2355T>C), TAT783TAC (2367T>C), TCA792TCT (2394A>T), AAA795AAG (2403A>G), GCC799GCT (2415C>T), GCG803GCT (2427G>T), ACA807ACG (2439A>G), AAA809AAG (2445A>G), TAC811TAT (2451C>T), GTC812GTA (2454C>A), ACG813TCT (2455A>T 2457G>T), CTA815TTA (2461C>T), GAA817GAG (2469A>G), TTA819CTG (2473T>C 2475A>G), TCC828TCT (2502C>T), AGA829AAG (2504G>A 2505A>G), GCT832GCA (2514T>A), GCG837GCA (2529G>A), AAT840AAC (2538T>C), GCT843GCG (2547T>G), TCG846TCA (2556G>A), CGT851CGC (2571T>C), GCA852GCG (2574A>G), CAG853CAA (2577G>A), TTA857TTG (2589A>G), TTG858CTG (2590T>C), TTG861CTG (2599T>C), CAG862CAA (2604G>A), GTC865GTT (2613C>T), TTC867TTT (2619C>T), AAA871AAG (2631A>G), GAC876GAT (2646C>T), CTC878CTT (2652C>T), AAA882AAG (2664A>G), TTT885TTC (2673T>C), ACA886ACT (2676A>T), AGT888AGC (2682T>C), GAT889GAA (2685T>A), GCA890GCG (2688A>G), CAC891CAT (2691C>T), TTA892TTG (2694A>G), CCT893CCG (2697T>G), TAC896TAT (2706C>T), TTG903TTA (2727G>A), GAT905GAC (2733T>C), AAC906AAT (2736C>T), CAA912CAG (2754A>G), ACT918ACA (2772T>A), TCG926TCA (2796G>A), GCC929GCT (2805C>T), AGA932CGA (2812A>C), TAT937TAC (2829T>C), TAT940TAC (2838T>C), CCA942CCG (2844A>G), ATT944ATC (2850T>C), GAA946GAG (2856A>G), TTG947TTA (2859G>A), TAT948TAC (2862T>C), GTG950GTA (2868G>A), TTG953CTA (2875T>C 2877G>A), GAA955GAG (2883A>G), AAC956AAT (2886C>T), TTA960CTA (2896T>C), CTG962TTG (2902C>T), ATT963ATC (2907T>C), TTA965CTA (2911T>C), GGA966GGC (2916A>C), GAC973GAT (2937C>T), TAT975TAC (2943T>C), GTT976GTC (2946T>C), TCA978TCG (2952A>G), AAG979AAA (2955G>A), AAG985AAA (2973G>A), TAT986TAC (2976T>C), AGA987AGG (2979A>G), CTA989TTA (2983C>T), GAA990GAG (2988A>G), TCA991TCG (2991A>G), TAC992TAT (2994C>T), GTG993GTA (2997G>A), TAC994TAT (3000C>T), TCC998TCT (3012C>T), TGC1003TGT (3027C>T), CAA1005CAG (3033A>G), TTA1006CTA (3034T>C), TTT1007TTC (3039T>C), GAT1008GAC (3042T>C), CCG1012CCA (3054G>A), GAC1013GAT (3057C>T), TTG1014CTA (3058T>C 3060G>A), GAG1015GAA (3063G>A), ATA1018ATC (3072A>C), CCA1021CCG (3081A>G), AAG1023AAA (3087G>A), AAA1025AAG (3093A>G), GTT1029GTC (3105T>C), ACA1030ACT (3108A>T), TTC1031TTT (3111C>T), TTA1033TTG (3117A>G), CAC1034CAT (3120C>T), TAT1036TAC (3126T>C), GCA1037GCT (3129A>T), CTA1039CTG (3135A>G), AAC1043AAT (3147C>T), TAC1044CAT (3148T>C 3150C>T), GCT1045GCC (3153T>C), ATA1046ATT (3156A>T), GGT1049GGC (3165T>C), AGC1053AGT (3177C>T), CTA1054TTA (3178C>T), TTT1055TTC (3183T>C), TGC1056TGT (3186C>T), AAT1057AAC (3189T>C), CCT1059CCA (3195T>A), AAG1069AAA (3225G>A), ATC1073ATT (3237C>T), TTA1076CTA (3244T>C), TCG1078TCA (3252G>A), TAC1080TAT (3258C>T), ACT1081ACC (3261T>C), AAC1082AAT (3264C>T), GCG1083GCA (3267G>A)
Proteins

VP1 (YP_002302227.1)	1	1089	100%	6962	97.7%	1089 (100%)	1059 (97.2%)	0/0/0/0	1
Protein mutations:	R56K (185G>A), N63S (206A>G 207T>C), V156A (485T>C 486C>T), V162I (502G>A), I177V (547A>G), A187E (578C>A 579A>G), D194E (600C>A), D221E (681C>A), K227R (698A>G), N289K (885T>A), V301T (919G>A 920T>C), V312A (953T>C 954T>C), R314C (958C>T 960T>C), N354D (1078A>G), V355I (1081G>A 1083G>A), E376K (1144G>A 1146A>G), R387Q (1178G>A 1179A>G), E431G (1310A>G), T514S (1558A>T 1560A>T), I544M (1650A>G), K553R (1676A>G), L555I (1681C>A 1683T>C), N579D (1753A>G 1755C>T), H619Y (1873C>T), I648V (1960A>G 1962C>T), I712V (2152A>G), T813S (2455A>T 2457G>T), R829K (2504G>A 2505A>G), D889E (2685T>A), Y1044H (3148T>C 3150C>T)
Codon mutations:	TAC4TAT (30C>T), CTA12TTA (52C>T), AAT17AAC (69T>C), ATA26ATT (96A>T), TAC28TAT (102C>T), AAC31AAT (111C>T), GAA35GAG (123A>G), TCC43TCT (147C>T), AAG44AAA (150G>A), TGT45TGC (153T>C), GAG47GAA (159G>A), GGG52GGA (174G>A), TTA53CTA (175T>C), TCG54TCA (180G>A), TTA55CTA (181T>C), AGA56AAA (185G>A), AAG57AAA (189G>A), TTG58CTC (190T>C 192G>C), AAT63AGC (206A>G 207T>C), GTC65GTT (213C>T), GAA67GAG (219A>G), TTA71CTG (229T>C 231A>G), CTG72TTG (232C>T), CTA75TTA (241C>T), TCA76TCG (246A>G), TAT77TAC (249T>C), GAC80GAT (258C>T), AAG81AAA (261G>A), AGA87AGG (279A>G), TTG89TTA (285G>A), GTG90GTA (288G>A), AAG91AAA (291G>A), GCG93GCA (297G>A), GGC95GGT (303C>T), AAA96AAG (306A>G), CCA97CCG (309A>G), TTG98CTA (310T>C 312G>A), GAG99GAA (315G>A), GAC101GAT (321C>T), TTA102TTG (324A>G), GAA106GAG (336A>G), GAG110GAA (348G>A), AAC111AAT (351C>T), AAT112AAC (354T>C), AAA113AAG (357A>G), GAA117GAG (369A>G), TTA118CTT (370T>C 372A>T), TTT119TTC (375T>C), GCG122GCA (384G>A), ACG126ACT (396G>T), GAC127GAT (399C>T), CTA129TTG (403C>T 405A>G), TCG137TCA (429G>A), CTA138TTA (430C>T), TTA142TTG (444A>G), GTC145GTT (453C>T), GTC156GCT (485T>C 486C>T), CTT160CTC (498T>C), GTT162ATT (502G>A), TAT163TAC (507T>C), TTA167TTG (519A>G), CTA169TTA (523C>T), TTC170TTT (528C>T), ACC171ACT (531C>T), GCC174GCT (540C>T), ACG176ACA (546G>A), ATA177GTA (547A>G), GGC181GGT (561C>T), CAT185CAC (573T>C), AAC186AAT (576C>T), GCA187GAG (578C>A 579A>G), AAG188AAA (582G>A), TAC189TAT (585C>T), TAC193TAT (597C>T), GAC194GAA (600C>A), GTA195GTG (603A>G), AAA199AAG (615A>G), CCA200CCG (618A>G), TTA203TTG (627A>G), GTG204GTA (630G>A), TTA214CTA (658T>C), TTC218TTT (672C>T), GAC221GAA (681C>A), GAC222GAT (684C>T), TTG224TTA (690G>A), ATA225ATT (693A>T), GCA226GCG (696A>G), AAA227AGA (698A>G), GAG228GAA (702G>A), TTA229CTG (703T>C 705A>G), GTG231GTA (711G>A), TTA232CTG (712T>C 714A>G), TCT238TCG (732T>G), AAG242AAA (744G>A), TTA243CTG (745T>C 747A>G), TCG249TCA (765G>A), TTG251CTG (769T>C), GCC253GCT (777C>T), TTG254TTA (780G>A), ATT257ATA (789T>A), AAT258AAC (792T>C), ACA263ACG (807A>G), GAA268GAG (822A>G), TTG269CTA (823T>C 825G>A), GAA270GAG (828A>G), AAT273AAC (837T>C), CCG281CCT (861G>T), GAT282GAC (864T>C), AAT289AAA (885T>A), CAA290CAG (888A>G), AAT294AAC (900T>C), AGG296AGA (906G>A), GGA299GGG (915A>G), GTT301ACT (919G>A 920T>C), GTT312GCC (953T>C 954T>C), CGT314TGC (958C>T 960T>C), ATC316ATT (966C>T), TTA321TTG (981A>G), AAG324AAA (990G>A), TCA327TCG (999A>G), TCG329TCA (1005G>A), GTT332GTC (1014T>C), TTT334TTC (1020T>C), AGA335AGG (1023A>G), CAA337CAG (1029A>G), CTA340TTG (1036C>T 1038A>G), GAT341GAC (1041T>C), GCT342GCC (1044T>C), CTG344TTA (1048C>T 1050G>A), AAT354GAT (1078A>G), GTG355ATA (1081G>A 1083G>A), GAC356GAT (1086C>T), CGG361CGA (1101G>A), TTA366CTA (1114T>C), GTA371GTT (1131A>T), GTT372GTG (1134T>G), GAA376AAG (1144G>A 1146A>G), GTT379GTA (1155T>A), AAA380AAG (1158A>G), CAC384CAT (1170C>T), CTA386TTA (1174C>T), CGA387CAG (1178G>A 1179A>G), GAG390GAA (1188G>A), TTA391TTG (1191A>G), TCG398TCA (1212G>A), GCA400GCG (1218A>G), GAG404GAA (1230G>A), AGG406AGA (1236G>A), CAG407CAA (1239G>A), AAG409AAA (1245G>A), AGG412AGA (1254G>A), AAA413AAG (1257A>G), TCA417TCG (1269A>G), GTC424GTA (1290C>A), GAT427GAC (1299T>C), AAC430AAT (1308C>T), GAA431GGA (1310A>G), AGA432AGG (1314A>G), TAC433TAT (1317C>T), CCT435CCA (1323T>A), GGT436GGC (1326T>C), GTT443GTC (1347T>C), CCA446CCG (1356A>G), AGA451AGG (1371A>G), GTT454GTA (1380T>A), AGG458CGG (1390A>C), ATT464ATC (1410T>C), CTG465TTA (1411C>T 1413G>A), TAC467TAT (1419C>T), TTC470TTT (1428C>T), CAG473CAA (1437G>A), CAC474CAT (1440C>T), GCT475GCC (1443T>C), TTG481CTA (1459T>C 1461G>A), TAC483TAT (1467C>T), GCA484GCG (1470A>G), ACG487ACT (1479G>T), GAA489GAG (1485A>G), TAC490TAT (1488C>T), TTT493TTC (1497T>C), TAT494TAC (1500T>C), CAA496CAG (1506A>G), AAC498AAT (1512C>T), CAA499CAG (1515A>G), TCA502TCT (1524A>T), TAC503TAT (1527C>T), GGC504GGT (1530C>T), GTA506GTT (1536A>T), ACG507ACA (1539G>A), CGT508CGC (1542T>C), TTG510TTA (1548G>A), ACA514TCT (1558A>T 1560A>T), GTC516GTG (1566C>G), TTG517CTA (1567T>C 1569G>A), ACG519ACA (1575G>A), GAT520GAC (1578T>C), TCT522TCC (1584T>C), GAT525GAC (1593T>C), TCG526TCA (1596G>A), CAG528CAA (1602G>A), CAT529CAC (1605T>C), ACA531ACG (1611A>G), GGA537GGG (1629A>G), ATA539ATT (1635A>T), GGA541GGG (1641A>G), CTG542TTG (1642C>T), ATA544ATG (1650A>G), TTA545CTA (1651T>C), AAC547AAT (1659C>T), AAA553AGA (1676A>G), GTT554GTC (1680T>C), CTT555ATC (1681C>A 1683T>C), TTA558CTA (1690T>C), AAT559AAC (1695T>C), TAC561TAT (1701C>T), CAA563CAG (1707A>G), ACA564ACG (1710A>G), ATC566ATT (1716C>T), CTC568CTA (1722C>A), GGC578GGT (1752C>T), AAC579GAT (1753A>G 1755C>T), GTC580GTT (1758C>T), AAG582AAA (1764G>A), AAA583AAG (1767A>G), TAC586TAT (1776C>T), GCA588GCT (1782A>T), GCA590GCG (1788A>G), GAG593GAA (1797G>A), AAA594AAG (1800A>G), CAA595CAG (1803A>G), GCA599GCG (1815A>G), TTG605TTA (1833G>A), ACG610ACA (1848G>A), TTG612TTA (1854G>A), CAT619TAT (1873C>T), GCA622GCG (1884A>G), ACA623ACG (1887A>G), AAA624AAG (1890A>G), GAT629GAC (1905T>C), GAT632GAC (1914T>C), AAC633AAT (1917C>T), TAT634TAC (1920T>C), GCG635GCA (1923G>A), GTG636GTA (1926G>A), CTA637TTG (1927C>T 1929A>G), CAA638CAG (1932A>G), TTT639TTC (1935T>C), GAG642GAA (1944G>A), GTG643GTA (1947G>A), AAG645AAA (1953G>A), CAG646CAA (1956G>A), ATC648GTT (1960A>G 1962C>T), GAC650GAT (1968C>T), TCG652TCA (1974G>A), GAT654GAC (1980T>C), GTA655GTG (1983A>G), ACT658ACG (1992T>G), GCA660GCG (1998A>G), CGC661CGA (2001C>A), GTT666GTC (2016T>C), CTG669TTA (2023C>T 2025G>A), TCC671TCT (2031C>T), GTA673GTG (2037A>G), ATT677ATA (2049T>A), TAC681TAT (2061C>T), GGA685GGG (2073A>G), TTT688TTC (2082T>C), CGA690AGA (2086C>A), CTA695TTA (2101C>T), CTT696CTG (2106T>G), AAT698AAC (2112T>C), GGG702GGA (2124G>A), CAG703CAA (2127G>A), ACG705ACA (2133G>A), GCA711GCT (2151A>T), ATT712GTT (2152A>G), TTA713CTA (2155T>C), TCA715TCG (2163A>G), AAT716AAC (2166T>C), GTA719GTG (2175A>G), AGA723CGA (2185A>C), GAT728GAC (2202T>C), AGG729AGA (2205G>A), TTT731TTC (2211T>C), TTA733TTG (2217A>G), AAG735AAA (2223G>A), CAG738CAA (2232G>A), ACG740ACA (2238G>A), GTC742GTT (2244C>T), GCA743GCT (2247A>T), ACT745ACA (2253T>A), TTA748CTA (2260T>C), CTA750CTC (2268A>C), GTA756GTG (2286A>G), ACT758ACC (2292T>C), AAT760AAC (2298T>C), TCA761TCT (2301A>T), ACA762ACG (2304A>G), GTA765GTG (2313A>G), GAT770GAC (2328T>C), TAC775TAT (2343C>T), GGA776GGG (2346A>G), ACG777ACA (2349G>A), GAT779GAC (2355T>C), TAT783TAC (2367T>C), TCA792TCT (2394A>T), AAA795AAG (2403A>G), GCC799GCT (2415C>T), GCG803GCT (2427G>T), ACA807ACG (2439A>G), AAA809AAG (2445A>G), TAC811TAT (2451C>T), GTC812GTA (2454C>A), ACG813TCT (2455A>T 2457G>T), CTA815TTA (2461C>T), GAA817GAG (2469A>G), TTA819CTG (2473T>C 2475A>G), TCC828TCT (2502C>T), AGA829AAG (2504G>A 2505A>G), GCT832GCA (2514T>A), GCG837GCA (2529G>A), AAT840AAC (2538T>C), GCT843GCG (2547T>G), TCG846TCA (2556G>A), CGT851CGC (2571T>C), GCA852GCG (2574A>G), CAG853CAA (2577G>A), TTA857TTG (2589A>G), TTG858CTG (2590T>C), TTG861CTG (2599T>C), CAG862CAA (2604G>A), GTC865GTT (2613C>T), TTC867TTT (2619C>T), AAA871AAG (2631A>G), GAC876GAT (2646C>T), CTC878CTT (2652C>T), AAA882AAG (2664A>G), TTT885TTC (2673T>C), ACA886ACT (2676A>T), AGT888AGC (2682T>C), GAT889GAA (2685T>A), GCA890GCG (2688A>G), CAC891CAT (2691C>T), TTA892TTG (2694A>G), CCT893CCG (2697T>G), TAC896TAT (2706C>T), TTG903TTA (2727G>A), GAT905GAC (2733T>C), AAC906AAT (2736C>T), CAA912CAG (2754A>G), ACT918ACA (2772T>A), TCG926TCA (2796G>A), GCC929GCT (2805C>T), AGA932CGA (2812A>C), TAT937TAC (2829T>C), TAT940TAC (2838T>C), CCA942CCG (2844A>G), ATT944ATC (2850T>C), GAA946GAG (2856A>G), TTG947TTA (2859G>A), TAT948TAC (2862T>C), GTG950GTA (2868G>A), TTG953CTA (2875T>C 2877G>A), GAA955GAG (2883A>G), AAC956AAT (2886C>T), TTA960CTA (2896T>C), CTG962TTG (2902C>T), ATT963ATC (2907T>C), TTA965CTA (2911T>C), GGA966GGC (2916A>C), GAC973GAT (2937C>T), TAT975TAC (2943T>C), GTT976GTC (2946T>C), TCA978TCG (2952A>G), AAG979AAA (2955G>A), AAG985AAA (2973G>A), TAT986TAC (2976T>C), AGA987AGG (2979A>G), CTA989TTA (2983C>T), GAA990GAG (2988A>G), TCA991TCG (2991A>G), TAC992TAT (2994C>T), GTG993GTA (2997G>A), TAC994TAT (3000C>T), TCC998TCT (3012C>T), TGC1003TGT (3027C>T), CAA1005CAG (3033A>G), TTA1006CTA (3034T>C), TTT1007TTC (3039T>C), GAT1008GAC (3042T>C), CCG1012CCA (3054G>A), GAC1013GAT (3057C>T), TTG1014CTA (3058T>C 3060G>A), GAG1015GAA (3063G>A), ATA1018ATC (3072A>C), CCA1021CCG (3081A>G), AAG1023AAA (3087G>A), AAA1025AAG (3093A>G), GTT1029GTC (3105T>C), ACA1030ACT (3108A>T), TTC1031TTT (3111C>T), TTA1033TTG (3117A>G), CAC1034CAT (3120C>T), TAT1036TAC (3126T>C), GCA1037GCT (3129A>T), CTA1039CTG (3135A>G), AAC1043AAT (3147C>T), TAC1044CAT (3148T>C 3150C>T), GCT1045GCC (3153T>C), ATA1046ATT (3156A>T), GGT1049GGC (3165T>C), AGC1053AGT (3177C>T), CTA1054TTA (3178C>T), TTT1055TTC (3183T>C), TGC1056TGT (3186C>T), AAT1057AAC (3189T>C), CCT1059CCA (3195T>A), AAG1069AAA (3225G>A), ATC1073ATT (3237C>T), TTA1076CTA (3244T>C), TCG1078TCA (3252G>A), TAC1080TAT (3258C>T), ACT1081ACC (3261T>C), AAC1082AAT (3264C>T), GCG1083GCA (3267G>A)

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43