Genome Detective

NGS Details (SRR3458562_Metagenome_example): Rotavirus A (segment 2)

Assembly

Coverage Length

2693 (1 contig(s))

Depth Of Coverage

4809.4

Number Of Reads

116495

Reads Per Million

7516.78 rpm (after QC)

Ambiguities

Assembly Method

de novo + reference guided assembly

Consensus Caller

Bcf Tools

Coverage Map

Map

Variant Tables

Consensus Variants

Download consensus variants (vcf)

Minority Variants

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SNP Variants Table

Download SNP mutations table (csv)

Annotated Variants Table

Download annotated variants table (csv)

Assignment

Type

Rotavirus A (Taxonomy ID: 28875)

Reference Genome

NC_011506.2

NT Identity (%)

81.3919

AA Identity (%)

95.1192

Number Of Stop Codons

Number Of CDS

Alignment

Segment

segment 2

Alignment Score

3359.0 (NT) + 5685.0 (AA) = 9044.0

Concordance (%)

80.4054

Alignment Method

Global, seeded, nucleotide + amino acids (AGA)

NT Alignment

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Region Bam File

Download BAM file (.bam)

CDS Alignment

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Consensus Sequence

Download consensus sequence (FASTA) (Including IUPAC ambiguity codes)

Consensus Contigs

Download consensus contigs (FASTA)

Genome Region

Sequence starts at position 1 and ends at position 2693 relative to NC_011506.2 reference sequence.

NC_011506.2

SRR3458562_Metagenome_example-NC_011506.2-89-4

NC_011506.2

SRR3458562_Metagenome_example-NC_011506.2-89-4

GGCTATTAAAGGCTCAATGGCGTATCGAAAACGTGGAGCGCGTCGTGAGACGAATCTAAAACAAGATGAACGAATGCAAGAAAAAGAAGATAGCAAGAACATTAATAATGACAGTCCTAAATCACAATTATCAGAAAAAGTATTATCTAAGAAAGAAGAGATAATTACAGATAATCAAGAAGAAGTTAAGATATCTGATGAGGTAAAAAAATCTAATAAAGAAGAATCGAAACAGTTGTTAGAAGTACTTAAAACAAAAGAGGAACATCAAAAAGAAGTTCAGTATGAAATATTACAAAAAACTATCCCTACATTTGAACCAAAAGAGTCAATACTCAAAAAATTAGAAGACATAAAACCAGAACAAGCAAAGAAACAAACTAAACTGTTTCGAATATTTGAACCGAAACAATTGCCTATTTATAGAGCTAATGGAGAAAGAGAGCTTCGTAATAGATGGTATTGGAAATTGAAACGAGATACTCTTCCTGATGGAGATTATGATGTTAGAGAGTATTTTTTAAATTTATATGATCAAGTATTAATGGAAATGCCGGATTATCTATTACTTAAAGATATGGCTGTAGAGAATAAAAATTCAAGGGATGCTGGCAAAGTAGTTGATTCTGAAACAGCCGCAATATGCGATGCTATTTTTCAAGATGAAGAAACCGAAGGTGCAGTAAGAAGATTCATAGCTGAGATGAGACAACGAGTTCAAGCTGATCGAAATGTAGTCAATTATCCATCTATATTGCATCCAATTGACCATGCGTTTAACGAATACTTCTTACAACATCAGTTGGTAGAACCATTAAATAATGATATCATTTTCAATTACATACCAGAGAGAATAAGAAATGATGTCAACTATATATTAAATATGGACAGGAATTTACCGTCTACTGCTAGATATATCAGACCAAACTTGCTACAAGATAGGTTAAATTTACATGATAATTTTGAGTCACTCTGGGATACTATAACTACATCTAATTAT

ATTTTAGCAAGATCTGTGGTGCCAGACCTAAAAGAATTAGTATCTACTGAGGCACAAATCCAGAAAATGTCACAAGATTTGCAATTGGAAGCTTTGACAATACAATCAGAGACTCAGTTTTTAACAGGTATAAACTCACAAGCCGCTAATGATTGTTTTAAAACTTTGATTGCTGCTATGTTGAGTCAGAGAACCATGTCATTAGATTTCGTAACGACAAATTACATGTCACTTATTTCAGGCATGTGGTTACTCACTGTGATTCCAAATGATATGTTTATAAGAGAATCATTAGTAGCATGTCAACTAGCCATAATAAATACCATTGTTTATCCGGCATTCGGAATGCAAAGAATGCATTATAGGAATGGTGATCCACAGACTCCCTTTCAAATTGCAGAGCAACAGATTCAAAATTTTCAGGTAGCTAATTGGTTACATTTTGTTAATTATAATCAGTTTAGACAAGTAGTGATTGATGGAGTGTTAAATCAAGTCTTGAATGATAATATAAGAAATGGTCATGTAGTCAACCAATTAATGGAAGCTCTGATGCAATTATCTAGACAACAGTTTCCCACAATGCCAGTTGATTATAAAAGATCTATACAGAGAGGAATTTTGCTGCTTTCTAACAGACTTGGTCAGCTTGTCGATTTAACAAGATTGTTATCATACAATTATGAGACATTAATGGCATGCATAACAATGAATATGCAGCATGTTCAAACATTAACAACTGAAAAATTGCAATTAACATCAGTAACATCATTATGTATGCTAATTGGAAATGCTACGGTTATACCGAGTCCGCAAACATTGTTCCATTACTATAATGTGAATGTCAATTTTCATTCAAATTATAATGAAAGAATTAATGACGCAGTTGCAATTATAACTGCGGCAAATAGATTAAATTTATATCAAAAGAAAATGAAATCAATAGTTGAGGACTTTCTGAAAAGATTACAGATATTTGATGTTGCGAGAGTACCAGATG

ACCAAATGTATAGATTGAGAGATAGATTAAGACTATTACCAGTTGAAATAAGAAGATTAGATATTTTTAATTTGATAGCAATGAATATGGAACAGATTGAACGTGCATCAGATAAAATTGCACAAGGAGTTATAATAGCATACCGAGATATGCAGTTAGAACGAGATGAGATGTATGGTTACGTCAATATTGCCAGAAACTTGGACGGATTTCAACAAATAAATCTTGAAGAATTGATGAGATCAGGAGATTATGCTCAAATTACTAACATGCTACTTAATAATCAACCAGTAGCTTTAGTTGGAGCGCTACCATTTATAACGGATTCATCAGTGATTTCGTTAATAGCTAAACTAGATGCAACCGTTTTTGCACAGATTGTCAAACTTAGAAAGGTCGACACGTTAAAACCCATCCTATATAAGATAAATTCAGATTCTAATGACTTTTATTTGGTGGCTAATTATGATTGGATTCCTACATCTACTACAAAAGTGTATAAACAAGTTCCACAACAATTTGATTTTAGAGCGTCAATGCATATGTTAACGTCTAACCTAACATTTACCGTATATTCAGATTTGCTTGCGTTCGTTTCAGCTGATACTGTTGAACCAATTAATGCTGTTGCTTTTGATAATATGCGCATCATGAACGAACTGTAAACGCCAACCCCATTGTGGAGATATGACC

GGCTATTAAAGGCTCAATGGCGTACAGGAAACGTGGAGCGCGCCGTGAGGCGAATATAAATAATAATGACCGAATGCAAGAGAAAGATGACGAGAAGCAGGATCAAAACAAT------AGAATGCAATTATCTGACAAAGTACTTTCAAAGAAAGAGGAAGTCGTAACCGACAATCAAGAGGAAATTAAGATTGCTGATGAAGTGAAGAAATCAACGAAAGAAGAATCTAAACAATTGCTTGAAGTTTTGAAAACAAAAGAAGAGCACCAAAAAGAAATACAGTATGAAATTTTACAAAAAACGATACCAACATTTGAACCAAAAGAGTCAATATTGAAGAAATTGGAAGATATCAAACCGGAACAGGCGAAGAAGCAGACTAAGCTATTTAGAATATTTGAACCGAGACAGCTGCCAATTTATAGAGCAAATGGTGAAAAAGAGTTGCGTAACAGATGGTATTGGAAGTTGAAGAAGGATACTTTACCAGATGGAGATTATGACGTTAGAGAGTATTTTCTAAATTTGTATGATCAGGTTCTTACTGAAATGCCAGATTATTTACTATTAAAAGATATGGCAGTTGAAAATAAAAACTCAAGAGATGCTGGTAAAGTTGTCGATTCTGAAACGGCAAGTATCTGTGATGCTATATTTCAAGATGAGGAAACAGAAGGCGCAGTGAGAAGATTCATTGCGGAGATGAGACAACGCGTACAAGCTGACAGGAACGTTGTCAATTACCCATCAATATTACATCCAATAGATTACGCTTTCAATGAGTATTTTTTACAACATCAATTAGTTGAACCATTAAATAATGATATAATATTCAATTACATTCCTGAAAGGATAAGGAATGACGTTAACTATATACTTAATATGGACAGAAATCTGCCATCAACAGCTAGATATATAAGACCTAATTTACTACAAGACAGACTGAATTTGCACGATAATTTTGAATCCTTGTGGGATACGATAACAACTTCAAACTAT

ATTCTGGCAAGATCGGTAGTACCGGATTTAAAGGAATTAGTTTCAACCGAAGCGCAAATTCAAAAAATGTCGCAAGATTTGCAACTAGAAGCATTAACAATACAGTCAGAAACGCAGTTTTTAACAGGTATAAACTCACAAGCGGCAAATGACTGTTTCAAAACTCTGATTGCAGCAATGTTAAGTCAAAGAACCATGTCGCTTGATTTCGTGACTACAAATTATATGTCATTAATTTCAGGTATGTGGTTACTAACTGTAGTGCCAAATGACATGTTCATAAGGGAATCATTGGTTGCATGCCAACTGGCTATAGTGAATACAATAATATATCCAGCGTTCGGAATGCAACGAATGCATTATAGAAACGGAGATCCACAGACACCATTTCAGATAGCAGAACAGCAGATACAAAATTTCCAGGTAGCGAATTGGCTGCATTTTGTCAATAACAATCAATTTAGACAAGTAGTTATTGATGGTGTATTGAATCAGGTACTGAATGACAATATTAGAAATGGACATGTCATTAATCAGTTGATGGAGGCTTTAATGCAACTATCACGACAACAGTTTCCAACAATGCCTGTTGATTATAAGAGGTCAATCCAGCGTGGAATATTATTGCTATCAAATAGGCTTGGTCAATTAGTTGATTTAACTAGGTTATTAGCTTACAACTACGAAACACTAATGGCATGTGTTACGATGAATATGCAACATGTTCAGACTTTGACAACAGAAAAATTACAGTTAACTTCAGTCACGTCGTTGTGTATGCTTATTGGTAATGCAACCGTTATACCCAGCCCGCAGACATTATTTCACTATTATAATGTTAATGTTAATTTTCATTCAAATTATAATGAAAGAATTAATGATGCAGTGGCCATAATAACTGCAGCTAATAGACTAAATTTATATCAGAAAAAGATGAAGGCAATAGTTGAAGATTTTTTAAAAAGATTACACATTTTCGATGTAGCTAGAGTTCCAGATG

ATCAAATGTATAGATTAAGGGATAGACTACGACTATTGCCAGTAGAAGTAAGACGATTGGATATTTTTAATTTGATACTGATGAACATGGATCAGATAGAACGTGCCTCAGACAAGATTGCGCAGGGTGTTATTATTGCATACCGCGATATGCAATTGGAAAGAGATGAAATGTATGGCTACGTGAATATAGCTAGGAATTTAGATGGGTTCCAGCAAATAAACCTAGAAGAATTGATGAGAACGGGCGATTATGCACAAATAACTAACATGCTCTTGAATAATCAACCAGTAGCGCTAGTTGGAGCTCTTCCATTTGTTACAGACTCGTCAGTCATATCGTTAATAGCGAAGCTTGACGCTACAGTTTTTGCCCAGATAGTTAAATTACGGAAAGTTGATACCTTGAAACCAATATTGTATAAAATAAATTCAGATTCGAATGACTTTTATCTAGTTGCCAATTATGATTGGGTGCCTACTTCAACCACAAAAGTATATAAACAAGTTCCACAGCAATTTGATTTCAGAAATTCGATGCATATGTTAACGTCAAATCTTACTTTCACCGTTTACTCAGATCTGCTTGCATTCGTATCGGCCGATACAGTAGAACCTATAAATGCAGTTGCATTTGATAATATGCGCATCATGAACGAGTTGTAAACGCCAACCCCACTGTGGAGATATGACC

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VP2

MAYRKRGARRETNLKQDERMQEKEDSKNINNDSPKSQLSEKVLSKKEEIITDNQEEVKISDEVKKSNKEESKQLLEVLKTKEEHQKEVQYEILQKTIPTFEPKESILKKLEDIKPEQAKKQTKLFRIFEPKQLPIYRANGERELRNRWYWKLKRDTLPDGDYDVREYFLNLYDQVLMEMPDYLLLKDMAVENKNSRDAGKVVDSETAAICDAIFQDEETEGAVRRFIAEMRQRVQADRNVVNYPSILHPIDHAFNEYFLQHQLVEPLNNDIIFNYIPERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFESLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVIPNDMFIRESLVACQLAIINTIVYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFVNYNQFRQVVIDGVLNQVLNDNIRNGHVVNQLMEALMQLSRQQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLSYNYETLMACITMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQKKMKSIVEDFLKRLQIFDVARVPDDQMYRLRDRLRLLPVEIRRLDIFNLIAMNMEQIERASDKIAQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQINLEELMRSGDYAQITNMLLNNQPVALVGALPFITDSSVISLIAKLDATVFAQIVKLRKVDTLKPILYKINSDSNDFYLVANYDWIPTSTTKVYKQVPQQFDFRASMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMRIMNEL*

MAYRKRGARREANINNNDRMQEKDDEKQDQNN--RMQLSDKVLSKKEEVVTDNQEEIKIADEVKKSTKEESKQLLEVLKTKEEHQKEIQYEILQKTIPTFEPKESILKKLEDIKPEQAKKQTKLFRIFEPRQLPIYRANGEKELRNRWYWKLKKDTLPDGDYDVREYFLNLYDQVLTEMPDYLLLKDMAVENKNSRDAGKVVDSETASICDAIFQDEETEGAVRRFIAEMRQRVQADRNVVNYPSILHPIDYAFNEYFLQHQLVEPLNNDIIFNYIPERIRNDVNYILNMDRNLPSTARYIRPNLLQDRLNLHDNFESLWDTITTSNYILARSVVPDLKELVSTEAQIQKMSQDLQLEALTIQSETQFLTGINSQAANDCFKTLIAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPAFGMQRMHYRNGDPQTPFQIAEQQIQNFQVANWLHFVNNNQFRQVVIDGVLNQVLNDNIRNGHVINQLMEALMQLSRQQFPTMPVDYKRSIQRGILLLSNRLGQLVDLTRLLAYNYETLMACVTMNMQHVQTLTTEKLQLTSVTSLCMLIGNATVIPSPQTLFHYYNVNVNFHSNYNERINDAVAIITAANRLNLYQKKMKAIVEDFLKRLHIFDVARVPDDQMYRLRDRLRLLPVEVRRLDIFNLILMNMDQIERASDKIAQGVIIAYRDMQLERDEMYGYVNIARNLDGFQQINLEELMRTGDYAQITNMLLNNQPVALVGALPFVTDSSVISLIAKLDATVFAQIVKLRKVDTLKPILYKINSDSNDFYLVANYDWVPTSTTKVYKQVPQQFDFRNSMHMLTSNLTFTVYSDLLAFVSADTVEPINAVAFDNMRIMNEL*

Alignment Detailed Statistics


	Begin	End	Coverage	Score	Concordance	Matches	Identities	I/D/M/F^*	Stop Codons
NT	1	2693	100%	3359	62.7%	2687 (99.8%)	2187 (81.2%)	0/6
Mutations:	25T>C, 26C>A, 28A>G, 43T>C, 50A>G, 56C>A, 61A>T, 62C>A, 64A>T, 65G>A, 70A>C, 82A>G, 88A>T, 91T>C, 92A>G, 93G>A, 94C>G, 98A>C, 100C>G, 101A>G, 102T>A, 104A>C, 106T>A, 109T>C, 110G>A, 112C>T, 113_118delAGTCCT, 120A>G, 122T>A, 123C>T, 124A>G, 133A>T, 136A>C, 143T>C, 145A>T, 148T>A, 157A>G, 160G>A, 161A>G, 163A>C, 164A>G, 166T>A, 169A>C, 172T>C, 181A>G, 185G>A, 193A>T, 194T>G, 202G>A, 205A>G, 208A>G, 214T>A, 216A>C, 217T>G, 229G>T, 235G>A, 239T>C, 241A>T, 247A>T, 248C>T, 250T>G, 262G>A, 265A>G, 268T>C, 278G>A, 280T>A, 292A>T, 304T>G, 307C>A, 310T>A, 335C>T, 337C>G, 340A>G, 346A>G, 352C>T, 355A>C, 361A>G, 367A>G, 370A>G, 376A>G, 379A>G, 385A>G, 388G>A, 392C>A, 408A>G, 412A>G, 413T>C, 418T>A, 430T>A, 436A>T, 441G>A, 446C>T, 448T>G, 454T>C, 469A>G, 475A>G, 476C>A, 477G>A, 478A>G, 485C>T, 487T>A, 490T>A, 505T>C, 521T>C, 529A>G, 538A>G, 541A>T, 542T>C, 544A>T, 546T>C, 547G>T, 556G>A, 563C>T, 566T>C, 569C>T, 571T>A, 583T>A, 586A>T, 589G>A, 598T>C, 604G>A, 613C>T, 619A>T, 622T>C, 634A>G, 637C>A, 638G>A, 639C>G, 640A>T, 643A>C, 646C>T, 655T>A, 667A>G, 673C>A, 679T>C, 685A>G, 697A>T, 700T>G, 715A>C, 718T>A, 727T>C, 728C>A, 730A>G, 733T>C, 736A>T, 745T>C, 751T>A, 757G>A, 766T>A, 769C>T, 770C>T, 772T>C, 775G>T, 778T>C, 781C>T, 784A>G, 787C>T, 790C>T, 802G>A, 805G>A, 808A>T, 829C>A, 832T>A, 844A>T, 847A>T, 850G>A, 853A>G, 859A>G, 865T>C, 868C>T, 878T>C, 880A>T, 892G>A, 896T>C, 898A>G, 901G>A, 904T>A, 907T>A, 919C>A, 925A>T, 928C>T, 931G>A, 940T>C, 943G>A, 944T>C, 946A>G, 952A>G, 955T>C, 967G>A, 970A>C, 971C>T, 973C>G, 982T>G, 988T>A, 991A>T, 994T>A, 997T>C, 1004T>C, 1006A>G, 1015T>G, 1018G>A, 1021G>A, 1024A>G, 1027C>T, 1028C>T, 1033A>G, 1042A>T, 1045T>A, 1048T>C, 1051G>A, 1054A>G, 1060C>T, 1063G>A, 1072A>G, 1085T>C, 1087G>A, 1093T>A, 1096G>A, 1105A>G, 1111G>A, 1114T>G, 1144C>G, 1147T>A, 1153T>C, 1159T>C, 1166T>C, 1174T>A, 1177T>A, 1183G>A, 1189G>A, 1201A>G, 1202T>C, 1204A>T, 1213A>G, 1216G>T, 1225C>T, 1232C>T, 1234T>A, 1243C>T, 1255C>A, 1261G>A, 1262A>G, 1264T>G, 1273T>C, 1279T>C, 1285A>G, 1294A>G, 1297A>T, 1303T>C, 1309A>G, 1312C>T, 1316A>G, 1318A>G, 1324C>A, 1327T>A, 1328G>A, 1330T>A, 1336G>A, 1339A>G, 1352A>C, 1366G>A, 1369T>C, 1372T>A, 1384T>A, 1387C>A, 1393A>G, 1396T>A, 1402G>A, 1405A>G, 1411T>A, 1420T>C, 1429T>G, 1436T>C, 1438A>G, 1447T>C, 1451T>A, 1453T>C, 1459G>A, 1474G>T, 1483A>T, 1486G>A, 1489A>G, 1495A>G, 1498C>A, 1499T>C, 1507T>C, 1513A>T, 1522T>A, 1528A>C, 1529G>A, 1531C>T, 1534C>T, 1537A>G, 1540A>G, 1546A>G, 1550C>T, 1552G>A, 1559T>C, 1564T>A, 1565A>C, 1579C>A, 1588A>T, 1600A>G, 1603A>G, 1606T>A, 1609A>C, 1613A>C, 1615A>T, 1621T>A, 1624G>A, 1625C>T, 1630T>A, 1633T>A, 1636C>T, 1639A>G, 1648G>A, 1649C>T, 1651T>A, 1654C>T, 1663A>T, 1666A>G, 1669G>A, 1673T>G, 1675A>T, 1681T>C, 1684T>C, 1687G>A, 1691T>C, 1702C>T, 1703A>G, 1705A>T, 1708A>G, 1720G>A, 1729A>G, 1732A>T, 1735A>G, 1741T>A, 1750G>A, 1753A>G, 1759A>T, 1765A>C, 1768A>G, 1771A>G, 1774A>G, 1783A>T, 1789A>T, 1795T>A, 1798G>C, 1807G>C, 1810T>C, 1816A>G, 1822G>A, 1825C>T, 1828T>C, 1831C>T, 1840G>T, 1846C>T, 1882C>T, 1888T>G, 1891A>C, 1894T>A, 1903G>A, 1906A>T, 1913T>C, 1927A>G, 1930G>A, 1933A>G, 1939A>G, 1940T>G, 1951G>A, 1954C>T, 1958C>T, 1960G>A, 1972G>C, 1975A>T, 1978T>C, 1984T>A, 1987G>T, 1993A>T, 2002C>T, 2017G>A, 2020A>G, 2027T>C, 2030A>C, 2038A>G, 2044T>A, 2048A>G, 2054A>C, 2059A>G, 2078G>C, 2079C>T, 2080A>G, 2086T>C, 2092A>T, 2098T>A, 2107A>C, 2113T>C, 2116A>G, 2122A>G, 2125A>G, 2128A>T, 2134A>T, 2137A>T, 2146A>C, 2155G>A, 2158A>G, 2162C>A, 2170G>A, 2179T>C, 2185C>G, 2191T>A, 2194C>T, 2197A>G, 2200C>T, 2203G>A, 2206C>T, 2209A>G, 2212T>C, 2215A>G, 2224T>C, 2227T>A, 2243T>A, 2245A>G, 2248A>C, 2257T>A, 2263T>A, 2275A>C, 2276C>T, 2278T>G, 2296T>G, 2297T>C, 2308G>T, 2311A>T, 2318A>G, 2320A>T, 2323G>A, 2326T>C, 2329A>G, 2335G>C, 2338T>A, 2350T>G, 2353A>G, 2356A>T, 2359T>C, 2362A>T, 2365C>A, 2374A>C, 2380T>A, 2383C>T, 2387C>T, 2389T>A, 2390A>C, 2392A>G, 2395G>A, 2398C>T, 2401C>T, 2404G>C, 2407A>G, 2413C>A, 2416C>A, 2417C>T, 2419A>G, 2425G>A, 2440T>G, 2453T>C, 2455G>A, 2458G>T, 2461T>C, 2474A>G, 2476T>G, 2482A>T, 2485T>A, 2488T>C, 2497G>A, 2515A>G, 2527T>C, 2531G>A, 2532C>A, 2533G>T, 2536A>G, 2554T>A, 2557C>T, 2560A>T, 2563A>T, 2566T>C, 2572A>T, 2575T>C, 2582T>C, 2590G>A, 2596T>A, 2599A>G, 2602T>C, 2608T>A, 2611T>A, 2617A>T, 2620T>A, 2626T>A, 2632T>A, 2659A>G, 2660C>T, 2678T>C
CDS

VP2	1	883	100%	5685	96.5%	881 (99.8%)	838 (94.9%)	0/2/0/0	1
Protein mutations:	T12A (50A>G), L14I (56C>A), K15N (61A>T), Q16N (62C>A 64A>T), D17N (65G>A), E18D (70A>C), E24D (88A>T), S26E (92A>G 93G>A 94C>G), N28Q (98A>C 100C>G), I29D (101A>G 102T>A), N30Q (104A>C 106T>A), D32N (110G>A 112C>T), S33_P34del (113_118delAGTCCT), K35R (120A>G), S36M (122T>A 123C>T 124A>G), E40D (136A>C), I49V (161A>G 163A>C), I50V (164A>G 166T>A), V57I (185G>A), S60A (194T>G), N67T (216A>C 217T>G), V88I (278G>A 280T>A), K131R (408A>G), R142K (441G>A), R154K (476C>A 477G>A 478A>G), M177T (546T>C 547G>T), A208S (638G>A 639C>G 640A>T), H252Y (770C>T 772T>C), I416V (1262A>G 1264T>G), I434V (1316A>G 1318A>G), V438I (1328G>A 1330T>A), Y479N (1451T>A 1453T>C), V505I (1529G>A 1531C>T), S553A (1673T>G 1675A>T), I563V (1703A>G 1705A>T), S642A (1940T>G), Q652H (1972G>C), I678V (2048A>G), A688L (2078G>C 2079C>T 2080A>G), E692D (2092A>T), S743T (2243T>A 2245A>G), I768V (2318A>G 2320A>T), I820V (2474A>G 2476T>G), A839N (2531G>A 2532C>A 2533G>T)
Codon mutations:	TAT3TAC (25T>C), CGA4AGG (26C>A 28A>G), CGT9CGC (43T>C), ACG12GCG (50A>G), CTA14ATA (56C>A), AAA15AAT (61A>T), CAA16AAT (62C>A 64A>T), GAT17AAT (65G>A), GAA18GAC (70A>C), GAA22GAG (82A>G), GAA24GAT (88A>T), GAT25GAC (91T>C), AGC26GAG (92A>G 93G>A 94C>G), AAC28CAG (98A>C 100C>G), ATT29GAT (101A>G 102T>A), AAT30CAA (104A>C 106T>A), AAT31AAC (109T>C), GAC32AAT (110G>A 112C>T), AGT33_CCT34del (113_118delAGTCCT), AAA35AGA (120A>G), TCA36ATG (122T>A 123C>T 124A>G), TCA39TCT (133A>T), GAA40GAC (136A>C), TTA43CTT (143T>C 145A>T), TCT44TCA (148T>A), GAA47GAG (157A>G), GAG48GAA (160G>A), ATA49GTC (161A>G 163A>C), ATT50GTA (164A>G 166T>A), ACA51ACC (169A>C), GAT52GAC (172T>C), GAA55GAG (181A>G), GTT57ATT (185G>A), ATA59ATT (193A>T), TCT60GCT (194T>G), GAG62GAA (202G>A), GTA63GTG (205A>G), AAA64AAG (208A>G), TCT66TCA (214T>A), AAT67ACG (216A>C 217T>G), TCG71TCT (229G>T), CAG73CAA (235G>A), TTA75CTT (239T>C 241A>T), GTA77GTT (247A>T), CTT78TTG (248C>T 250T>G), GAG82GAA (262G>A), GAA83GAG (265A>G), CAT84CAC (268T>C), GTT88ATA (278G>A 280T>A), ATA92ATT (292A>T), ACT96ACG (304T>G), ATC97ATA (307C>A), CCT98CCA (310T>A), CTC107TTG (335C>T 337C>G), AAA108AAG (340A>G), TTA110TTG (346A>G), GAC112GAT (352C>T), ATA113ATC (355A>C), CCA115CCG (361A>G), CAA117CAG (367A>G), GCA118GCG (370A>G), AAA120AAG (376A>G), CAA121CAG (379A>G), AAA123AAG (385A>G), CTG124CTA (388G>A), CGA126AGA (392C>A), AAA131AGA (408A>G), CAA132CAG (412A>G), TTG133CTG (413T>C), CCT134CCA (418T>A), GCT138GCA (430T>A), GGA140GGT (436A>T), AGA142AAA (441G>A), CTT144TTG (446C>T 448T>G), AAT146AAC (454T>C), AAA151AAG (469A>G), AAA153AAG (475A>G), CGA154AAG (476C>A 477G>A 478A>G), CTT157TTA (485C>T 487T>A), CCT158CCA (490T>A), GAT163GAC (505T>C), TTA169CTA (521T>C), TTA171TTG (529A>G), CAA174CAG (538A>G), GTA175GTT (541A>T), TTA176CTT (542T>C 544A>T), ATG177ACT (546T>C 547G>T), CCG180CCA (556G>A), CTA183TTA (563C>T), TTA184CTA (566T>C), CTT185TTA (569C>T 571T>A), GCT189GCA (583T>A), GTA190GTT (586A>T), GAG191GAA (589G>A), AAT194AAC (598T>C), AGG196AGA (604G>A), GGC199GGT (613C>T), GTA201GTT (619A>T), GTT202GTC (622T>C), ACA206ACG (634A>G), GCC207GCA (637C>A), GCA208AGT (638G>A 639C>G 640A>T), ATA209ATC (643A>C), TGC210TGT (646C>T), ATT213ATA (655T>A), GAA217GAG (667A>G), ACC219ACA (673C>A), GGT221GGC (679T>C), GTA223GTG (685A>G), ATA227ATT (697A>T), GCT228GCG (700T>G), CGA233CGC (715A>C), GTT234GTA (718T>A), GAT237GAC (727T>C), CGA238AGG (728C>A 730A>G), AAT239AAC (733T>C), GTA240GTT (736A>T), TAT243TAC (745T>C), TCT245TCA (751T>A), TTG247TTA (757G>A), ATT250ATA (766T>A), GAC251GAT (769C>T), CAT252TAC (770C>T 772T>C), GCG253GCT (775G>T), TTT254TTC (778T>C), AAC255AAT (781C>T), GAA256GAG (784A>G), TAC257TAT (787C>T), TTC258TTT (790C>T), CAG262CAA (802G>A), TTG263TTA (805G>A), GTA264GTT (808A>T), ATC271ATA (829C>A), ATT272ATA (832T>A), ATA276ATT (844A>T), CCA277CCT (847A>T), GAG278GAA (850G>A), AGA279AGG (853A>G), AGA281AGG (859A>G), GAT283GAC (865T>C), GTC284GTT (868C>T), TTA288CTT (878T>C 880A>T), AGG292AGA (892G>A), TTA294CTG (896T>C 898A>G), CCG295CCA (901G>A), TCT296TCA (904T>A), ACT297ACA (907T>A), ATC301ATA (919C>A), CCA303CCT (925A>T), AAC304AAT (928C>T), TTG305TTA (931G>A), GAT308GAC (940T>C), AGG309AGA (943G>A), TTA310CTG (944T>C 946A>G), TTA312TTG (952A>G), CAT313CAC (955T>C), GAG317GAA (967G>A), TCA318TCC (970A>C), CTC319TTG (971C>T 973C>G), ACT322ACG (982T>G), ACT324ACA (988T>A), ACA325ACT (991A>T), TCT326TCA (994T>A), AAT327AAC (997T>C), TTA330CTG (1004T>C 1006A>G), TCT333TCG (1015T>G), GTG334GTA (1018G>A), GTG335GTA (1021G>A), CCA336CCG (1024A>G), GAC337GAT (1027C>T), CTA338TTA (1028C>T), AAA339AAG (1033A>G), GTA342GTT (1042A>T), TCT343TCA (1045T>A), ACT344ACC (1048T>C), GAG345GAA (1051G>A), GCA346GCG (1054A>G), ATC348ATT (1060C>T), CAG349CAA (1063G>A), TCA352TCG (1072A>G), TTG357CTA (1085T>C 1087G>A), GCT359GCA (1093T>A), TTG360TTA (1096G>A), CAA363CAG (1105A>G), GAG365GAA (1111G>A), ACT366ACG (1114T>G), GCC376GCG (1144C>G), GCT377GCA (1147T>A), GAT379GAC (1153T>C), TTT381TTC (1159T>C), TTG384CTG (1166T>C), GCT386GCA (1174T>A), GCT387GCA (1177T>A), TTG389TTA (1183G>A), CAG391CAA (1189G>A), TCA395TCG (1201A>G), TTA396CTT (1202T>C 1204A>T), GTA399GTG (1213A>G), ACG400ACT (1216G>T), TAC403TAT (1225C>T), CTT406TTA (1232C>T 1234T>A), GGC409GGT (1243C>T), CTC413CTA (1255C>A), GTG415GTA (1261G>A), ATT416GTG (1262A>G 1264T>G), GAT419GAC (1273T>C), TTT421TTC (1279T>C), AGA423AGG (1285A>G), TTA426TTG (1294A>G), GTA427GTT (1297A>T), TGT429TGC (1303T>C), CTA431CTG (1309A>G), GCC432GCT (1312C>T), ATA434GTG (1316A>G 1318A>G), ACC436ACA (1324C>A), ATT437ATA (1327T>A), GTT438ATA (1328G>A 1330T>A), CCG440CCA (1336G>A), GCA441GCG (1339A>G), AGA446CGA (1352A>C), AGG450AGA (1366G>A), AAT451AAC (1369T>C), GGT452GGA (1372T>A), ACT456ACA (1384T>A), CCC457CCA (1387C>A), CAA459CAG (1393A>G), ATT460ATA (1396T>A), GAG462GAA (1402G>A), CAA463CAG (1405A>G), ATT465ATA (1411T>A), TTT468TTC (1420T>C), GCT471GCG (1429T>G), TTA474CTG (1436T>C 1438A>G), GTT477GTC (1447T>C), TAT479AAC (1451T>A 1453T>C), CAG481CAA (1459G>A), GTG486GTT (1474G>T), GGA489GGT (1483A>T), GTG490GTA (1486G>A), TTA491TTG (1489A>G), CAA493CAG (1495A>G), GTC494GTA (1498C>A), TTG495CTG (1499T>C), GAT497GAC (1507T>C), ATA499ATT (1513A>T), GGT502GGA (1522T>A), GTA504GTC (1528A>C), GTC505ATT (1529G>A 1531C>T), AAC506AAT (1534C>T), CAA507CAG (1537A>G), TTA508TTG (1540A>G), GAA510GAG (1546A>G), CTG512TTA (1550C>T 1552G>A), TTA515CTA (1559T>C), TCT516TCA (1564T>A), AGA517CGA (1565A>C), CCC521CCA (1579C>A), CCA524CCT (1588A>T), AAA528AAG (1600A>G), AGA529AGG (1603A>G), TCT530TCA (1606T>A), ATA531ATC (1609A>C), AGA533CGT (1613A>C 1615A>T), ATT535ATA (1621T>A), TTG536TTA (1624G>A), CTG537TTG (1625C>T), CTT538CTA (1630T>A), TCT539TCA (1633T>A), AAC540AAT (1636C>T), AGA541AGG (1639A>G), CAG544CAA (1648G>A), CTT545TTA (1649C>T 1651T>A), GTC546GTT (1654C>T), ACA549ACT (1663A>T), AGA550AGG (1666A>G), TTG551TTA (1669G>A), TCA553GCT (1673T>G 1675A>T), AAT555AAC (1681T>C), TAT556TAC (1684T>C), GAG557GAA (1687G>A), TTA559CTA (1691T>C), TGC562TGT (1702C>T), ATA563GTT (1703A>G 1705A>T), ACA564ACG (1708A>G), CAG568CAA (1720G>A), CAA571CAG (1729A>G), ACA572ACT (1732A>T), TTA573TTG (1735A>G), ACT575ACA (1741T>A), TTG578TTA (1750G>A), CAA579CAG (1753A>G), ACA581ACT (1759A>T), GTA583GTC (1765A>C), ACA584ACG (1768A>G), TCA585TCG (1771A>G), TTA586TTG (1774A>G), CTA589CTT (1783A>T), GGA591GGT (1789A>T), GCT593GCA (1795T>A), ACG594ACC (1798G>C), CCG597CCC (1807G>C), AGT598AGC (1810T>C), CAA600CAG (1816A>G), TTG602TTA (1822G>A), TTC603TTT (1825C>T), CAT604CAC (1828T>C), TAC605TAT (1831C>T), GTG608GTT (1840G>T), GTC610GTT (1846C>T), GAC622GAT (1882C>T), GTT624GTG (1888T>G), GCA625GCC (1891A>C), ATT626ATA (1894T>A), GCG629GCA (1903G>A), GCA630GCT (1906A>T), TTA633CTA (1913T>C), CAA637CAG (1927A>G), AAG638AAA (1930G>A), AAA639AAG (1933A>G), AAA641AAG (1939A>G), TCA642GCA (1940T>G), GAG645GAA (1951G>A), GAC646GAT (1954C>T), CTG648TTA (1958C>T 1960G>A), CAG652CAC (1972G>C), ATA653ATT (1975A>T), TTT654TTC (1978T>C), GTT656GTA (1984T>A), GCG657GCT (1987G>T), GTA659GTT (1993A>T), GAC662GAT (2002C>T), TTG667TTA (2017G>A), AGA668AGG (2020A>G), TTA671CTA (2027T>C), AGA672CGA (2030A>C), TTA674TTG (2038A>G), GTT676GTA (2044T>A), ATA678GTA (2048A>G), AGA680CGA (2054A>C), TTA681TTG (2059A>G), GCA688CTG (2078G>C 2079C>T 2080A>G), AAT690AAC (2086T>C), GAA692GAT (2092A>T), ATT694ATA (2098T>A), GCA697GCC (2107A>C), GAT699GAC (2113T>C), AAA700AAG (2116A>G), GCA702GCG (2122A>G), CAA703CAG (2125A>G), GGA704GGT (2128A>T), ATA706ATT (2134A>T), ATA707ATT (2137A>T), CGA710CGC (2146A>C), CAG713CAA (2155G>A), TTA714TTG (2158A>G), CGA716AGA (2162C>A), GAG718GAA (2170G>A), GGT721GGC (2179T>C), GTC723GTG (2185C>G), ATT725ATA (2191T>A), GCC726GCT (2194C>T), AGA727AGG (2197A>G), AAC728AAT (2200C>T), TTG729TTA (2203G>A), GAC730GAT (2206C>T), GGA731GGG (2209A>G), TTT732TTC (2212T>C), CAA733CAG (2215A>G), AAT736AAC (2224T>C), CTT737CTA (2227T>A), TCA743ACG (2243T>A 2245A>G), GGA744GGC (2248A>C), GCT747GCA (2257T>A), ATT749ATA (2263T>A), CTA753CTC (2275A>C), CTT754TTG (2276C>T 2278T>G), GCT760GCG (2296T>G), TTA761CTA (2297T>C), GCG764GCT (2308G>T), CTA765CTT (2311A>T), ATA768GTT (2318A>G 2320A>T), ACG769ACA (2323G>A), GAT770GAC (2326T>C), TCA771TCG (2329A>G), GTG773GTC (2335G>C), ATT774ATA (2338T>A), GCT778GCG (2350T>G), AAA779AAG (2353A>G), CTA780CTT (2356A>T), GAT781GAC (2359T>C), GCA782GCT (2362A>T), ACC783ACA (2365C>A), GCA786GCC (2374A>C), ATT788ATA (2380T>A), GTC789GTT (2383C>T), CTT791TTA (2387C>T 2389T>A), AGA792CGG (2390A>C 2392A>G), AAG793AAA (2395G>A), GTC794GTT (2398C>T), GAC795GAT (2401C>T), ACG796ACC (2404G>C), TTA797TTG (2407A>G), CCC799CCA (2413C>A), ATC800ATA (2416C>A), CTA801TTG (2417C>T 2419A>G), AAG803AAA (2425G>A), TCT808TCG (2440T>G), TTG813CTA (2453T>C 2455G>A), GTG814GTT (2458G>T), GCT815GCC (2461T>C), ATT820GTG (2474A>G 2476T>G), ACA822ACT (2482A>T), TCT823TCA (2485T>A), ACT824ACC (2488T>C), GTG827GTA (2497G>A), CAA833CAG (2515A>G), TTT837TTC (2527T>C), GCG839AAT (2531G>A 2532C>A 2533G>T), TCA840TCG (2536A>G), TCT846TCA (2554T>A), AAC847AAT (2557C>T), CTA848CTT (2560A>T), ACA849ACT (2563A>T), TTT850TTC (2566T>C), GTA852GTT (2572A>T), TAT853TAC (2575T>C), TTG856CTG (2582T>C), GCG858GCA (2590G>A), GTT860GTA (2596T>A), TCA861TCG (2599A>G), GCT862GCC (2602T>C), ACT864ACA (2608T>A), GTT865GTA (2611T>A), CCA867CCT (2617A>T), ATT868ATA (2620T>A), GCT870GCA (2626T>A), GCT872GCA (2632T>A), GAA881GAG (2659A>G), CTG882TTG (2660C>T)
Proteins

VP2 (YP_002302226.1)	1	883	100%	5685	96.5%	881 (99.8%)	838 (94.9%)	0/2/0/0	1
Protein mutations:	T12A (50A>G), L14I (56C>A), K15N (61A>T), Q16N (62C>A 64A>T), D17N (65G>A), E18D (70A>C), E24D (88A>T), S26E (92A>G 93G>A 94C>G), N28Q (98A>C 100C>G), I29D (101A>G 102T>A), N30Q (104A>C 106T>A), D32N (110G>A 112C>T), S33_P34del (113_118delAGTCCT), K35R (120A>G), S36M (122T>A 123C>T 124A>G), E40D (136A>C), I49V (161A>G 163A>C), I50V (164A>G 166T>A), V57I (185G>A), S60A (194T>G), N67T (216A>C 217T>G), V88I (278G>A 280T>A), K131R (408A>G), R142K (441G>A), R154K (476C>A 477G>A 478A>G), M177T (546T>C 547G>T), A208S (638G>A 639C>G 640A>T), H252Y (770C>T 772T>C), I416V (1262A>G 1264T>G), I434V (1316A>G 1318A>G), V438I (1328G>A 1330T>A), Y479N (1451T>A 1453T>C), V505I (1529G>A 1531C>T), S553A (1673T>G 1675A>T), I563V (1703A>G 1705A>T), S642A (1940T>G), Q652H (1972G>C), I678V (2048A>G), A688L (2078G>C 2079C>T 2080A>G), E692D (2092A>T), S743T (2243T>A 2245A>G), I768V (2318A>G 2320A>T), I820V (2474A>G 2476T>G), A839N (2531G>A 2532C>A 2533G>T)
Codon mutations:	TAT3TAC (25T>C), CGA4AGG (26C>A 28A>G), CGT9CGC (43T>C), ACG12GCG (50A>G), CTA14ATA (56C>A), AAA15AAT (61A>T), CAA16AAT (62C>A 64A>T), GAT17AAT (65G>A), GAA18GAC (70A>C), GAA22GAG (82A>G), GAA24GAT (88A>T), GAT25GAC (91T>C), AGC26GAG (92A>G 93G>A 94C>G), AAC28CAG (98A>C 100C>G), ATT29GAT (101A>G 102T>A), AAT30CAA (104A>C 106T>A), AAT31AAC (109T>C), GAC32AAT (110G>A 112C>T), AGT33_CCT34del (113_118delAGTCCT), AAA35AGA (120A>G), TCA36ATG (122T>A 123C>T 124A>G), TCA39TCT (133A>T), GAA40GAC (136A>C), TTA43CTT (143T>C 145A>T), TCT44TCA (148T>A), GAA47GAG (157A>G), GAG48GAA (160G>A), ATA49GTC (161A>G 163A>C), ATT50GTA (164A>G 166T>A), ACA51ACC (169A>C), GAT52GAC (172T>C), GAA55GAG (181A>G), GTT57ATT (185G>A), ATA59ATT (193A>T), TCT60GCT (194T>G), GAG62GAA (202G>A), GTA63GTG (205A>G), AAA64AAG (208A>G), TCT66TCA (214T>A), AAT67ACG (216A>C 217T>G), TCG71TCT (229G>T), CAG73CAA (235G>A), TTA75CTT (239T>C 241A>T), GTA77GTT (247A>T), CTT78TTG (248C>T 250T>G), GAG82GAA (262G>A), GAA83GAG (265A>G), CAT84CAC (268T>C), GTT88ATA (278G>A 280T>A), ATA92ATT (292A>T), ACT96ACG (304T>G), ATC97ATA (307C>A), CCT98CCA (310T>A), CTC107TTG (335C>T 337C>G), AAA108AAG (340A>G), TTA110TTG (346A>G), GAC112GAT (352C>T), ATA113ATC (355A>C), CCA115CCG (361A>G), CAA117CAG (367A>G), GCA118GCG (370A>G), AAA120AAG (376A>G), CAA121CAG (379A>G), AAA123AAG (385A>G), CTG124CTA (388G>A), CGA126AGA (392C>A), AAA131AGA (408A>G), CAA132CAG (412A>G), TTG133CTG (413T>C), CCT134CCA (418T>A), GCT138GCA (430T>A), GGA140GGT (436A>T), AGA142AAA (441G>A), CTT144TTG (446C>T 448T>G), AAT146AAC (454T>C), AAA151AAG (469A>G), AAA153AAG (475A>G), CGA154AAG (476C>A 477G>A 478A>G), CTT157TTA (485C>T 487T>A), CCT158CCA (490T>A), GAT163GAC (505T>C), TTA169CTA (521T>C), TTA171TTG (529A>G), CAA174CAG (538A>G), GTA175GTT (541A>T), TTA176CTT (542T>C 544A>T), ATG177ACT (546T>C 547G>T), CCG180CCA (556G>A), CTA183TTA (563C>T), TTA184CTA (566T>C), CTT185TTA (569C>T 571T>A), GCT189GCA (583T>A), GTA190GTT (586A>T), GAG191GAA (589G>A), AAT194AAC (598T>C), AGG196AGA (604G>A), GGC199GGT (613C>T), GTA201GTT (619A>T), GTT202GTC (622T>C), ACA206ACG (634A>G), GCC207GCA (637C>A), GCA208AGT (638G>A 639C>G 640A>T), ATA209ATC (643A>C), TGC210TGT (646C>T), ATT213ATA (655T>A), GAA217GAG (667A>G), ACC219ACA (673C>A), GGT221GGC (679T>C), GTA223GTG (685A>G), ATA227ATT (697A>T), GCT228GCG (700T>G), CGA233CGC (715A>C), GTT234GTA (718T>A), GAT237GAC (727T>C), CGA238AGG (728C>A 730A>G), AAT239AAC (733T>C), GTA240GTT (736A>T), TAT243TAC (745T>C), TCT245TCA (751T>A), TTG247TTA (757G>A), ATT250ATA (766T>A), GAC251GAT (769C>T), CAT252TAC (770C>T 772T>C), GCG253GCT (775G>T), TTT254TTC (778T>C), AAC255AAT (781C>T), GAA256GAG (784A>G), TAC257TAT (787C>T), TTC258TTT (790C>T), CAG262CAA (802G>A), TTG263TTA (805G>A), GTA264GTT (808A>T), ATC271ATA (829C>A), ATT272ATA (832T>A), ATA276ATT (844A>T), CCA277CCT (847A>T), GAG278GAA (850G>A), AGA279AGG (853A>G), AGA281AGG (859A>G), GAT283GAC (865T>C), GTC284GTT (868C>T), TTA288CTT (878T>C 880A>T), AGG292AGA (892G>A), TTA294CTG (896T>C 898A>G), CCG295CCA (901G>A), TCT296TCA (904T>A), ACT297ACA (907T>A), ATC301ATA (919C>A), CCA303CCT (925A>T), AAC304AAT (928C>T), TTG305TTA (931G>A), GAT308GAC (940T>C), AGG309AGA (943G>A), TTA310CTG (944T>C 946A>G), TTA312TTG (952A>G), CAT313CAC (955T>C), GAG317GAA (967G>A), TCA318TCC (970A>C), CTC319TTG (971C>T 973C>G), ACT322ACG (982T>G), ACT324ACA (988T>A), ACA325ACT (991A>T), TCT326TCA (994T>A), AAT327AAC (997T>C), TTA330CTG (1004T>C 1006A>G), TCT333TCG (1015T>G), GTG334GTA (1018G>A), GTG335GTA (1021G>A), CCA336CCG (1024A>G), GAC337GAT (1027C>T), CTA338TTA (1028C>T), AAA339AAG (1033A>G), GTA342GTT (1042A>T), TCT343TCA (1045T>A), ACT344ACC (1048T>C), GAG345GAA (1051G>A), GCA346GCG (1054A>G), ATC348ATT (1060C>T), CAG349CAA (1063G>A), TCA352TCG (1072A>G), TTG357CTA (1085T>C 1087G>A), GCT359GCA (1093T>A), TTG360TTA (1096G>A), CAA363CAG (1105A>G), GAG365GAA (1111G>A), ACT366ACG (1114T>G), GCC376GCG (1144C>G), GCT377GCA (1147T>A), GAT379GAC (1153T>C), TTT381TTC (1159T>C), TTG384CTG (1166T>C), GCT386GCA (1174T>A), GCT387GCA (1177T>A), TTG389TTA (1183G>A), CAG391CAA (1189G>A), TCA395TCG (1201A>G), TTA396CTT (1202T>C 1204A>T), GTA399GTG (1213A>G), ACG400ACT (1216G>T), TAC403TAT (1225C>T), CTT406TTA (1232C>T 1234T>A), GGC409GGT (1243C>T), CTC413CTA (1255C>A), GTG415GTA (1261G>A), ATT416GTG (1262A>G 1264T>G), GAT419GAC (1273T>C), TTT421TTC (1279T>C), AGA423AGG (1285A>G), TTA426TTG (1294A>G), GTA427GTT (1297A>T), TGT429TGC (1303T>C), CTA431CTG (1309A>G), GCC432GCT (1312C>T), ATA434GTG (1316A>G 1318A>G), ACC436ACA (1324C>A), ATT437ATA (1327T>A), GTT438ATA (1328G>A 1330T>A), CCG440CCA (1336G>A), GCA441GCG (1339A>G), AGA446CGA (1352A>C), AGG450AGA (1366G>A), AAT451AAC (1369T>C), GGT452GGA (1372T>A), ACT456ACA (1384T>A), CCC457CCA (1387C>A), CAA459CAG (1393A>G), ATT460ATA (1396T>A), GAG462GAA (1402G>A), CAA463CAG (1405A>G), ATT465ATA (1411T>A), TTT468TTC (1420T>C), GCT471GCG (1429T>G), TTA474CTG (1436T>C 1438A>G), GTT477GTC (1447T>C), TAT479AAC (1451T>A 1453T>C), CAG481CAA (1459G>A), GTG486GTT (1474G>T), GGA489GGT (1483A>T), GTG490GTA (1486G>A), TTA491TTG (1489A>G), CAA493CAG (1495A>G), GTC494GTA (1498C>A), TTG495CTG (1499T>C), GAT497GAC (1507T>C), ATA499ATT (1513A>T), GGT502GGA (1522T>A), GTA504GTC (1528A>C), GTC505ATT (1529G>A 1531C>T), AAC506AAT (1534C>T), CAA507CAG (1537A>G), TTA508TTG (1540A>G), GAA510GAG (1546A>G), CTG512TTA (1550C>T 1552G>A), TTA515CTA (1559T>C), TCT516TCA (1564T>A), AGA517CGA (1565A>C), CCC521CCA (1579C>A), CCA524CCT (1588A>T), AAA528AAG (1600A>G), AGA529AGG (1603A>G), TCT530TCA (1606T>A), ATA531ATC (1609A>C), AGA533CGT (1613A>C 1615A>T), ATT535ATA (1621T>A), TTG536TTA (1624G>A), CTG537TTG (1625C>T), CTT538CTA (1630T>A), TCT539TCA (1633T>A), AAC540AAT (1636C>T), AGA541AGG (1639A>G), CAG544CAA (1648G>A), CTT545TTA (1649C>T 1651T>A), GTC546GTT (1654C>T), ACA549ACT (1663A>T), AGA550AGG (1666A>G), TTG551TTA (1669G>A), TCA553GCT (1673T>G 1675A>T), AAT555AAC (1681T>C), TAT556TAC (1684T>C), GAG557GAA (1687G>A), TTA559CTA (1691T>C), TGC562TGT (1702C>T), ATA563GTT (1703A>G 1705A>T), ACA564ACG (1708A>G), CAG568CAA (1720G>A), CAA571CAG (1729A>G), ACA572ACT (1732A>T), TTA573TTG (1735A>G), ACT575ACA (1741T>A), TTG578TTA (1750G>A), CAA579CAG (1753A>G), ACA581ACT (1759A>T), GTA583GTC (1765A>C), ACA584ACG (1768A>G), TCA585TCG (1771A>G), TTA586TTG (1774A>G), CTA589CTT (1783A>T), GGA591GGT (1789A>T), GCT593GCA (1795T>A), ACG594ACC (1798G>C), CCG597CCC (1807G>C), AGT598AGC (1810T>C), CAA600CAG (1816A>G), TTG602TTA (1822G>A), TTC603TTT (1825C>T), CAT604CAC (1828T>C), TAC605TAT (1831C>T), GTG608GTT (1840G>T), GTC610GTT (1846C>T), GAC622GAT (1882C>T), GTT624GTG (1888T>G), GCA625GCC (1891A>C), ATT626ATA (1894T>A), GCG629GCA (1903G>A), GCA630GCT (1906A>T), TTA633CTA (1913T>C), CAA637CAG (1927A>G), AAG638AAA (1930G>A), AAA639AAG (1933A>G), AAA641AAG (1939A>G), TCA642GCA (1940T>G), GAG645GAA (1951G>A), GAC646GAT (1954C>T), CTG648TTA (1958C>T 1960G>A), CAG652CAC (1972G>C), ATA653ATT (1975A>T), TTT654TTC (1978T>C), GTT656GTA (1984T>A), GCG657GCT (1987G>T), GTA659GTT (1993A>T), GAC662GAT (2002C>T), TTG667TTA (2017G>A), AGA668AGG (2020A>G), TTA671CTA (2027T>C), AGA672CGA (2030A>C), TTA674TTG (2038A>G), GTT676GTA (2044T>A), ATA678GTA (2048A>G), AGA680CGA (2054A>C), TTA681TTG (2059A>G), GCA688CTG (2078G>C 2079C>T 2080A>G), AAT690AAC (2086T>C), GAA692GAT (2092A>T), ATT694ATA (2098T>A), GCA697GCC (2107A>C), GAT699GAC (2113T>C), AAA700AAG (2116A>G), GCA702GCG (2122A>G), CAA703CAG (2125A>G), GGA704GGT (2128A>T), ATA706ATT (2134A>T), ATA707ATT (2137A>T), CGA710CGC (2146A>C), CAG713CAA (2155G>A), TTA714TTG (2158A>G), CGA716AGA (2162C>A), GAG718GAA (2170G>A), GGT721GGC (2179T>C), GTC723GTG (2185C>G), ATT725ATA (2191T>A), GCC726GCT (2194C>T), AGA727AGG (2197A>G), AAC728AAT (2200C>T), TTG729TTA (2203G>A), GAC730GAT (2206C>T), GGA731GGG (2209A>G), TTT732TTC (2212T>C), CAA733CAG (2215A>G), AAT736AAC (2224T>C), CTT737CTA (2227T>A), TCA743ACG (2243T>A 2245A>G), GGA744GGC (2248A>C), GCT747GCA (2257T>A), ATT749ATA (2263T>A), CTA753CTC (2275A>C), CTT754TTG (2276C>T 2278T>G), GCT760GCG (2296T>G), TTA761CTA (2297T>C), GCG764GCT (2308G>T), CTA765CTT (2311A>T), ATA768GTT (2318A>G 2320A>T), ACG769ACA (2323G>A), GAT770GAC (2326T>C), TCA771TCG (2329A>G), GTG773GTC (2335G>C), ATT774ATA (2338T>A), GCT778GCG (2350T>G), AAA779AAG (2353A>G), CTA780CTT (2356A>T), GAT781GAC (2359T>C), GCA782GCT (2362A>T), ACC783ACA (2365C>A), GCA786GCC (2374A>C), ATT788ATA (2380T>A), GTC789GTT (2383C>T), CTT791TTA (2387C>T 2389T>A), AGA792CGG (2390A>C 2392A>G), AAG793AAA (2395G>A), GTC794GTT (2398C>T), GAC795GAT (2401C>T), ACG796ACC (2404G>C), TTA797TTG (2407A>G), CCC799CCA (2413C>A), ATC800ATA (2416C>A), CTA801TTG (2417C>T 2419A>G), AAG803AAA (2425G>A), TCT808TCG (2440T>G), TTG813CTA (2453T>C 2455G>A), GTG814GTT (2458G>T), GCT815GCC (2461T>C), ATT820GTG (2474A>G 2476T>G), ACA822ACT (2482A>T), TCT823TCA (2485T>A), ACT824ACC (2488T>C), GTG827GTA (2497G>A), CAA833CAG (2515A>G), TTT837TTC (2527T>C), GCG839AAT (2531G>A 2532C>A 2533G>T), TCA840TCG (2536A>G), TCT846TCA (2554T>A), AAC847AAT (2557C>T), CTA848CTT (2560A>T), ACA849ACT (2563A>T), TTT850TTC (2566T>C), GTA852GTT (2572A>T), TAT853TAC (2575T>C), TTG856CTG (2582T>C), GCG858GCA (2590G>A), GTT860GTA (2596T>A), TCA861TCG (2599A>G), GCT862GCC (2602T>C), ACT864ACA (2608T>A), GTT865GTA (2611T>A), CCA867CCT (2617A>T), ATT868ATA (2620T>A), GCT870GCA (2626T>A), GCT872GCA (2632T>A), GAA881GAG (2659A>G), CTG882TTG (2660C>T)

^*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43