Version 2.16.1 Genome Detective Platform
NGS Details (SRR3458562_Metagenome_example): Bovine alphaherpesvirus 1
Assembly
67956 (248 contig(s))
22.2
14789
954.25 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools
Coverage Map
Variant Tables
Assignment
Alignment
135758.0 (NT) + 133538.0 (AA) = 269296.0
99.8488
Local, heuristic, nucleotide (BLASTN)
Genome Region
Select a protein in the search box or a mutation in the table below to see the alignment details. Duplicated protein names are extended with "- CDS name".
Alignment Detailed Statistics
| Begin | End | Coverage | Score | Concordance | Matches | Identities | I/D/M/F* | Stop Codons | |
|---|---|---|---|---|---|---|---|---|---|
| NT | 71 | 134071 | 50.4% | 135758 | 99.9% | 67956 (99.9%) | 67920 (99.9%) | 1/0 | |
| Mutations: | 1224T>G, 7418A>G, 7424T>G, 12161G>A, 12724C>A, 19861G>T, 23113T>A, 23117G>C, 23300T>G, 23877G>A, 25550_25551insT, 26284C>T, 26288T>C, 37977G>A, 37983A>C, 40007T>G, 41796G>A, 46107T>C, 48218G>T, 57456C>G, 60386G>T, 66755C>A, 67181T>A, 68737C>G, 71500A>G, 79670G>T, 80237T>C, 90950G>T, 91355A>G, 94002A>G, 97891C>T, 97896C>T, 100118G>T, 100676A>G, 114890C>A, 117493G>C, 121424G>T | ||||||||