Version 2.16.3
Genome Detective Platform

NGS Details (SRR3458562_Metagenome_example): Escherichia phage Lambda_ev207

Assembly

26317 (50 contig(s))
9.7
2375
153.25 rpm (after QC)
0
read mapping against reference + variant calling
Bcf Tools

Coverage Map

Variant Tables

Assignment

Escherichia phage Lambda_ev207 (Taxonomy ID: 2742956)
99.943
99.5309
48
70

Alignment

52574.0 (NT) + 52920.0 (AA) = 105494.0
99.9308
Local, heuristic, nucleotide (BLASTN)

Alignment Detailed Statistics

BeginEndCoverageScoreConcordanceMatchesIdentitiesI/D/M/F*Stop Codons
NT82764653056.4%5257499.9%26317 (100%)26302 (99.9%)0/0
Mutations:12654T>C, 12714T>C, 12849C>T, 13789T>A, 13915A>G, 15919A>C, 15928T>C, 16165C>G, 16282A>G, 16363A>G, 16369T>C, 27891T>C, 28086G>T, 29858C>T, 30824G>A
CDS
10419346.6%60898.7%90 (100%)90 (100%)0/0/0/01
14534.1%29597.0%45 (100%)44 (97.8%)0/0/0/00
647810.6%11493.4%15 (100%)14 (93.3%)0/0/0/00
29385433.3%179897.5%284 (100%)280 (98.6%)0/0/0/01
11412.7%10599.1%14 (100%)14 (100%)0/0/0/00
123388.0%143598.6%205 (100%)203 (99.0%)0/0/0/01
Protein mutations:S123R (13789T>A)
Codon mutations:AGT123AGA (13789T>A), GGA165GGG (13915A>G)
124189.5%180999.3%222 (100%)221 (99.5%)0/0/0/00
11339.4%11189.5%19 (100%)18 (94.7%)0/0/0/00
5196643.8%355298.3%499 (100%)494 (99.0%)0/0/0/00
Protein mutations:D223E (16165C>G)
Codon mutations:ATA141ATC (15919A>C), AAT144AAC (15928T>C), GAC223GAG (16165C>G), GGA262GGG (16282A>G), AAA289AAG (16363A>G), CTT291CTC (16369T>C)
37468625.5%131296.3%202 (100%)198 (98.0%)0/0/1/00
759824.5%159100%24 (100%)24 (100%)0/0/0/01
5528581.1%1508100%231 (100%)231 (100%)0/0/0/01
126571.7%135398.0%205 (100%)203 (99.0%)0/0/0/00
127598.2%175499.7%270 (100%)269 (99.6%)0/0/0/01
3230570.2%143498.8%214 (100%)212 (99.1%)0/0/0/01
125798.1%172099.8%252 (100%)252 (100%)0/0/0/01
152100%335100%52 (100%)52 (100%)0/0/0/01
115180.4%25397.7%41 (100%)41 (100%)0/0/0/01
138189.5%233196.8%341 (100%)337 (98.8%)0/0/2/01
179100%547100%79 (100%)79 (100%)0/0/0/01
180100%603100%80 (100%)80 (100%)0/0/0/01
1109100%762100%109 (100%)109 (100%)0/0/0/01
17467.6%33895.2%50 (100%)49 (98.0%)0/0/0/01
141100%280100%41 (100%)41 (100%)0/0/0/01
138100%230100%38 (100%)38 (100%)0/0/0/01
161100%426100%61 (100%)61 (100%)0/0/0/01
122797.8%157599.2%222 (100%)221 (99.5%)0/0/0/01
4626282.8%1579100%217 (100%)217 (100%)0/0/0/01
19982.8%57296.6%82 (100%)81 (98.8%)0/0/0/01
190100%563100%90 (100%)90 (100%)0/0/0/01
1123100%877100%123 (100%)123 (100%)0/0/0/01
141100%265100%41 (100%)41 (100%)0/0/0/01
119478.9%105598.0%153 (100%)152 (99.3%)0/0/0/01
109190.1%50998.5%82 (100%)82 (100%)0/0/0/01
1250100%1676100%250 (100%)250 (100%)0/0/0/01
1186100%1426100%186 (100%)186 (100%)0/0/0/01
1232100%1629100%232 (100%)232 (100%)0/0/0/01
199100%643100%99 (100%)99 (100%)0/0/0/01
1300100%2113100%300 (100%)300 (100%)0/0/0/01
123491.9%148399.6%215 (100%)214 (99.5%)0/0/0/01
197100%621100%97 (100%)97 (100%)0/0/0/01
1147100%1053100%147 (100%)147 (100%)0/0/0/01
1176100%1287100%176 (100%)176 (100%)0/0/0/01
159100%432100%59 (100%)59 (100%)0/0/0/01
1124100%87197.1%124 (100%)123 (99.2%)0/0/1/01
165100%465100%65 (100%)65 (100%)0/0/0/01
1121100%854100%121 (100%)121 (100%)0/0/0/01
147100%315100%47 (100%)47 (100%)0/0/0/01
112890.6%83699.1%116 (100%)115 (99.1%)0/0/0/01
6238184.0%221999.6%320 (100%)320 (100%)0/0/0/01
313923.1%5186.4%9 (100%)9 (100%)0/0/0/01
387248.6%204100%35 (100%)35 (100%)0/0/0/01
1166100%1158100%166 (100%)166 (100%)0/0/0/01
1154100%1002100%154 (100%)154 (100%)0/0/0/01
110343.7%28496.6%45 (100%)44 (97.8%)0/0/0/01
466429.7%131100%19 (100%)19 (100%)0/0/0/01
Proteins
10419346.6%60898.7%90 (100%)90 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
14534.1%29597.0%45 (100%)44 (97.8%)0/0/0/00
Protein mutations:none
Codon mutations:none
647810.6%11493.4%15 (100%)14 (93.3%)0/0/0/00
Protein mutations:none
Codon mutations:none
29385433.3%179897.5%284 (100%)280 (98.6%)0/0/0/01
Protein mutations:none
Codon mutations:GCT707GCC (12654T>C), GCT727GCC (12714T>C), TAC772TAT (12849C>T)
11412.7%10599.1%14 (100%)14 (100%)0/0/0/00
Protein mutations:none
Codon mutations:none
123388.0%143598.6%205 (100%)203 (99.0%)0/0/0/01
Protein mutations:S123R (13789T>A)
Codon mutations:AGT123AGA (13789T>A), GGA165GGG (13915A>G)
124189.5%180999.3%222 (100%)221 (99.5%)0/0/0/00
Protein mutations:none
Codon mutations:none
11339.4%11189.5%19 (100%)18 (94.7%)0/0/0/00
Protein mutations:none
Codon mutations:none
5196643.8%355298.3%499 (100%)494 (99.0%)0/0/0/00
Protein mutations:D223E (16165C>G)
Codon mutations:ATA141ATC (15919A>C), AAT144AAC (15928T>C), GAC223GAG (16165C>G), GGA262GGG (16282A>G), AAA289AAG (16363A>G), CTT291CTC (16369T>C)
37468625.5%131296.3%202 (100%)198 (98.0%)0/0/1/00
Protein mutations:none
Codon mutations:none
759824.5%159100%24 (100%)24 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
5528581.1%1508100%231 (100%)231 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
126571.7%135398.0%205 (100%)203 (99.0%)0/0/0/00
Protein mutations:none
Codon mutations:none
127598.2%175499.7%270 (100%)269 (99.6%)0/0/0/01
Protein mutations:none
Codon mutations:none
3230570.2%143498.8%214 (100%)212 (99.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
125798.1%172099.8%252 (100%)252 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
152100%335100%52 (100%)52 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
115180.4%25397.7%41 (100%)41 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
138189.5%233196.8%341 (100%)337 (98.8%)0/0/2/01
Protein mutations:none
Codon mutations:ATC240ATA (28086G>T), GCA305GCG (27891T>C)
179100%547100%79 (100%)79 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
180100%603100%80 (100%)80 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1109100%762100%109 (100%)109 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
17467.6%33895.2%50 (100%)49 (98.0%)0/0/0/01
Protein mutations:none
Codon mutations:CTG28CTA (29858C>T)
141100%280100%41 (100%)41 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
138100%230100%38 (100%)38 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
161100%426100%61 (100%)61 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
122797.8%157599.2%222 (100%)221 (99.5%)0/0/0/01
Protein mutations:none
Codon mutations:GAC176GAT (30824G>A)
4626282.8%1579100%217 (100%)217 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
19982.8%57296.6%82 (100%)81 (98.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
190100%563100%90 (100%)90 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1123100%877100%123 (100%)123 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
141100%265100%41 (100%)41 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
119478.9%105598.0%153 (100%)152 (99.3%)0/0/0/01
Protein mutations:none
Codon mutations:none
109190.1%50998.5%82 (100%)82 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1250100%1676100%250 (100%)250 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1186100%1426100%186 (100%)186 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1232100%1629100%232 (100%)232 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
199100%643100%99 (100%)99 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1300100%2113100%300 (100%)300 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
123491.9%148399.6%215 (100%)214 (99.5%)0/0/0/01
Protein mutations:none
Codon mutations:none
197100%621100%97 (100%)97 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1147100%1053100%147 (100%)147 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1176100%1287100%176 (100%)176 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
159100%432100%59 (100%)59 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1124100%87197.1%124 (100%)123 (99.2%)0/0/1/01
Protein mutations:none
Codon mutations:none
165100%465100%65 (100%)65 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1121100%854100%121 (100%)121 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
147100%315100%47 (100%)47 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
112890.6%83699.1%116 (100%)115 (99.1%)0/0/0/01
Protein mutations:none
Codon mutations:none
6238184.0%221999.6%320 (100%)320 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
313923.1%5186.4%9 (100%)9 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
387248.6%204100%35 (100%)35 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1166100%1158100%166 (100%)166 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
1154100%1002100%154 (100%)154 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
110343.7%28496.6%45 (100%)44 (97.8%)0/0/0/01
Protein mutations:none
Codon mutations:none
466429.7%131100%19 (100%)19 (100%)0/0/0/01
Protein mutations:none
Codon mutations:none
*: Inserts / Deletes / Misaligned / Frameshifts

Analysis details

This analysis was performed with panviral2.43